Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20876
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    29   0.94 
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.8  
SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    27   3.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.7  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    25   8.7  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   8.7  

>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = +1

Query: 373 LCNSDGCSSSEGVEIVVADT-----DGSHLRPLDYSIGEKNKPFKQTSGKGWALTSSNGV 537
           L NSD  S  + V + +        +GS L  +   + E N   ++ S   W+L+SS+ +
Sbjct: 19  LVNSDPASKVDNVSVKIEQESPLALEGSPLPTVSDVLPETNNAHEEVSSSSWSLSSSDSI 78

Query: 538 CILES 552
              +S
Sbjct: 79  MSYDS 83


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1184

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +1

Query: 265  KSRILLDGKEVWSSAGSATSAA-FKVK-KGGRYQMQVE-LCNSDGCSSSEGVEIVVADTD 435
            + R+  + KE+ S +   +  A FK K K  + +  V+ +   D          VVA T 
Sbjct: 1000 RERLDDNAKEILSRSSPKSPVAWFKRKFKNRKDKAAVKRMLEEDSSKQLSSGRDVVAPTS 1059

Query: 436  GSHLRPLDYS-IGEKNKPFKQTSGKGWALTSSNG 534
             +H    D S +GE  KP    S K  A+TS NG
Sbjct: 1060 VNH----DVSHVGESTKPAVNNSTKPVAVTSKNG 1089


>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 573 VPNLT--HLLYGFIPICGGDGINDSLKEIEGSFQALQRSCSGREDF-KVSIHDP 725
           +PN T  H+    +P   GDGI   LKE E +   + +    R DF +V+ +DP
Sbjct: 44  IPNSTYQHVSKNRVPPTDGDGITKRLKEFERTV-TVNKDGIFRYDFNQVASNDP 96


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
          Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 88 GHRENERYHPMPHNW 44
          G  EN +YHP P +W
Sbjct: 47 GKWENHQYHPSPDDW 61


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = +1

Query: 355  YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQT 498
            Y  +  +C ++   +S  ++ VVA  D   ++ +DY +      FK+T
Sbjct: 862  YTKRKIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKET 909


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 276 PARWEGSLEQCRQRHISRFQSEEGWK 353
           P RW  ++  CR++H      E GW+
Sbjct: 78  PERWSNTVNSCRRQH----PDENGWQ 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,525
Number of Sequences: 5004
Number of extensions: 61261
Number of successful extensions: 175
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)