Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20876
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0242 + 10823312-10823342,10823662-10823732,10824010-108240... 30 2.3
02_03_0099 + 15206282-15206917 30 2.3
12_02_0728 + 22606447-22606461,22606651-22606971,22607821-226079... 29 3.0
03_05_0792 + 27743375-27743518,27743761-27743858,27743956-277439... 29 3.0
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644... 29 3.0
05_05_0313 - 24026142-24026708 29 5.2
10_08_0827 + 20849312-20849833,20850352-20850417,20850786-208510... 28 6.9
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 28 6.9
05_01_0129 - 872127-872681,872762-873070,873180-873347 28 6.9
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537... 28 6.9
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49... 28 6.9
11_06_0617 - 25552308-25552978,25553384-25553454,25553691-255537... 28 9.1
10_08_0902 - 21449748-21449993,21450136-21450460,21450658-214509... 28 9.1
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 28 9.1
09_06_0281 + 22014394-22015534,22016041-22017056 28 9.1
07_01_0373 + 2783596-2784933 28 9.1
>05_03_0242 +
10823312-10823342,10823662-10823732,10824010-10824021,
10827329-10827394,10827564-10827766,10827977-10828266,
10828377-10828468,10829876-10830344,10830670-10830978,
10831290-10831364,10831457-10831614
Length = 591
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = +2
Query: 116 PGIPNLGWGERTFAIVEVNQAATAYNQLVTKKDAADVSVNWNVWTGARP 262
PG+ W E AI+ V + NQ ++ ++W + T A P
Sbjct: 409 PGLGEQDWSEEDDAIINVLACSLELNQRAARRVPVQTGISWMLETMANP 457
>02_03_0099 + 15206282-15206917
Length = 211
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Frame = +1
Query: 268 SRILLDGKEVWSSAGSATSAAFKV---KKGGRYQMQVELCNSDGCSSSEGVEIVVADTD 435
+R++++ + + A +ATS A + GGRY + + ++ S++E E+VV + D
Sbjct: 38 ARLIVEAPDSAAPAAAATSLALAAAARRTGGRYALVLPDRDAAAASAAETAEVVVGEAD 96
>12_02_0728 +
22606447-22606461,22606651-22606971,22607821-22607941,
22608041-22608193,22608754-22609424
Length = 426
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -3
Query: 521 VSAHPFPEVCLKGLFFSPIE*SRGLKW----LPSVSATTISTPSLELHPSELQSSTCIWY 354
++ PF +CL + FS + ++ W + S P +LH S SS C +
Sbjct: 358 INGDPFTNICLSNISFSLADSTQSSSWSCSNISGYSELVFPEPCPDLHHSSSNSSIC-FS 416
Query: 353 LPPFFTLKAA 324
L + L AA
Sbjct: 417 LLTYHALAAA 426
>03_05_0792 +
27743375-27743518,27743761-27743858,27743956-27743986,
27744150-27744249,27744441-27744511,27744777-27744971,
27745660-27745728,27748073-27748177,27748694-27748912
Length = 343
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 597 RVNESGSVPGRGPQGTF*DTHPIRRSKRPPFSRSLLEGFIFLTNRIIER 451
+V ESGS GRGP T RR RP FS + L+ L +++ER
Sbjct: 7 KVVESGSRGGRGPVRTICVFCGSRRGNRPSFSAAALD----LGKQLVER 51
>01_06_0959 -
33362810-33363125,33363309-33363475,33363583-33364410,
33364483-33364719,33365455-33365871,33365951-33366412,
33367197-33367382
Length = 870
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 457 DYSIGEKNKPFKQTSGKGWALTSSNGVCILESSL 558
D+ IGE +K F++ + KG ++ SNG + + L
Sbjct: 649 DFDIGENSKLFQKVAKKGTSVYPSNGTAVEKQKL 682
>05_05_0313 - 24026142-24026708
Length = 188
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 394 SSSEGVEIVVADTDGSHLRPLDYSIGEKNKPFKQTSGKG 510
+S EG +V + G H P Y G P +TSG G
Sbjct: 61 TSEEGFRALVQELTGRHADPSKYRGGGGGAPVDETSGGG 99
>10_08_0827 +
20849312-20849833,20850352-20850417,20850786-20851082,
20851215-20851412,20851748-20851849,20851960-20852100,
20852171-20852278,20852588-20852670,20852829-20852991,
20853636-20853650,20853968-20854093
Length = 606
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 543 PRKFPVDRVPVPNLTHLLYGFIPICGG 623
P +F ++ PVPN T+ Y FIP GG
Sbjct: 488 PERFDLEG-PVPNETNTEYRFIPFSGG 513
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 321 CGAAGTAPDFLPIEQDSGLVGRAP 250
CG+A T P+E+D G V R P
Sbjct: 64 CGSAATPTPATPVEEDKGSVRRVP 87
>05_01_0129 - 872127-872681,872762-873070,873180-873347
Length = 343
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 498 FGKRVGAYFVEWGVYPRKFPVDRVPV 575
+G+ G + V WG+ R+ PV +PV
Sbjct: 77 YGQAAGNFLVAWGLASRRLPVAPLPV 102
>03_05_1137 +
30652967-30653183,30653281-30653485,30653696-30653786,
30653904-30654046,30654186-30654429,30654536-30654640,
30654985-30655167,30655255-30655459,30655552-30656036
Length = 625
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 594 VNESGSVPGRGPQGTF*DTHPIRRSKRPPFSRSLLEG 484
V + G+V G T DTH + PP+ S++ G
Sbjct: 230 VGDGGTVKGINENNTIIDTHGLLTIHMPPYYNSIIRG 266
>02_01_0071 -
496936-497158,497231-497352,497918-497966,498141-498211,
498368-498454,498660-498740,498838-498901,498994-499057,
499246-499444,499916-500134
Length = 392
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -1
Query: 238 PVDGDVSGVLLGHELVVSCGRLVDFDDRERALAPAEVR 125
P D D+S ++G + ++S L +D E APAE +
Sbjct: 312 PQDNDLSSYMVGDKSILSDAGLKSIEDVEALPAPAETK 349
>11_06_0617 -
25552308-25552978,25553384-25553454,25553691-25553727,
25553807-25553927,25554309-25554428,25554834-25555130,
25555286-25555288
Length = 439
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 4/57 (7%)
Frame = -3
Query: 521 VSAHPFPEVCLKGLFFSPIE*SRGLKWLPS----VSATTISTPSLELHPSELQSSTC 363
+ PF +CL L FS + + W S S P ELH + SS C
Sbjct: 371 IEGDPFSAICLSNLNFSIADLAPSSAWTCSNVHGYSELVFPKPCSELHDTSTNSSIC 427
>10_08_0902 -
21449748-21449993,21450136-21450460,21450658-21450905,
21451091-21451324
Length = 350
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 635 IDAITTTNRNEAVE*MSQVRYRDAVHRELSRIHTPFDEVSAHPFPEVC 492
+D N + +E +S RYR HR + +H + +SA F + C
Sbjct: 256 LDGAFVVNVGDMLEILSNGRYRSVEHRAV--VHPEKERISAAVFHQAC 301
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 534 PIRRSKRPPFSRSLLEGFIFLTNRIIERP 448
P R RP + L+ G IF+TNRI+ RP
Sbjct: 273 PHRILHRPRPTSELVAGAIFITNRILCRP 301
>09_06_0281 + 22014394-22015534,22016041-22017056
Length = 718
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 262 DKSRILLDGKEVWSSAGSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIV 420
D S++ G WSS G+ A V R ++ V CN + E I+
Sbjct: 100 DVSKLAPSGSGTWSSLGTVAGAGPYVVSEQRNRLVVTGCNVQATLAGENTNII 152
>07_01_0373 + 2783596-2784933
Length = 445
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/78 (26%), Positives = 38/78 (48%)
Frame = +2
Query: 170 NQAATAYNQLVTKKDAADVSVNWNVWTGARPTSPESCSMGRKSGAVPAAPHQPLSK*RRV 349
+Q + A L+ K AA + ++ T + PT+P S S + A P PH + +++
Sbjct: 99 DQPSKAIEWLI-KAAAAAIDKLPSLDTASFPTNPAS-SAAVAAAAAPPLPHAEREQQQQL 156
Query: 350 EDTRCRSSSATQTDAALA 403
+ C S+S T + L+
Sbjct: 157 TKSGCSSTSETSKGSVLS 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,232,546
Number of Sequences: 37544
Number of extensions: 465590
Number of successful extensions: 1608
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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