Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20876
(751 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down synd... 36 0.16
AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhe... 36 0.16
AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhe... 36 0.16
AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhe... 36 0.16
AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhe... 36 0.16
AK127158-1|BAC86860.1| 142|Homo sapiens MS1). protein. 33 1.4
AF491813-1|AAM09558.1| 2113|Homo sapiens Down syndrome cell adhe... 33 1.4
AF334384-1|AAL57166.1| 2053|Homo sapiens Down syndrome cell adhe... 33 1.4
AF304305-1|AAN32614.1| 1842|Homo sapiens Down syndrome cell adhe... 33 1.4
AF304304-1|AAN32613.1| 2053|Homo sapiens Down syndrome cell adhe... 33 1.4
AB032958-1|BAA86446.2| 2092|Homo sapiens KIAA1132 protein protein. 33 1.4
AL023753-3|CAA19295.1| 483|Homo sapiens PRAME family member 12 ... 32 2.5
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 4.4
>AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down
syndrome cell adhesion molecule protein.
Length = 1029
Score = 35.9 bits (79), Expect = 0.16
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 286 GKEVWSSAG----SATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRP 453
G VW++A S + + +++ Y++Q+ +CNS GC+ + + DGS + P
Sbjct: 534 GTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPP 592
Query: 454 LDYSIGEKNKPFKQTSGKGWALTSSNGVCIL 546
L S+ + + G +T S CIL
Sbjct: 593 LIKSVVQNEEGLTTNEGLKMLVTIS---CIL 620
>AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhesion
molecule splice variant protein.
Length = 1746
Score = 35.9 bits (79), Expect = 0.16
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 286 GKEVWSSAG----SATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRP 453
G VW++A S + + +++ Y++Q+ +CNS GC+ + + DGS + P
Sbjct: 1269 GTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPP 1327
Query: 454 LDYSIGEKNKPFKQTSGKGWALTSSNGVCIL 546
L S+ + + G +T S CIL
Sbjct: 1328 LIKSVVQNEEGLTTNEGLKMLVTIS---CIL 1355
>AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 2012
Score = 35.9 bits (79), Expect = 0.16
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 286 GKEVWSSAG----SATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRP 453
G VW++A S + + +++ Y++Q+ +CNS GC+ + + DGS + P
Sbjct: 1517 GTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPP 1575
Query: 454 LDYSIGEKNKPFKQTSGKGWALTSSNGVCIL 546
L S+ + + G +T S CIL
Sbjct: 1576 LIKSVVQNEEGLTTNEGLKMLVTIS---CIL 1603
>AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 1896
Score = 35.9 bits (79), Expect = 0.16
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 286 GKEVWSSAG----SATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRP 453
G VW++A S + + +++ Y++Q+ +CNS GC+ + + DGS + P
Sbjct: 1503 GTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPP 1561
Query: 454 LDYSIGEKNKPFKQTSGKGWALTSSNGVCIL 546
L S+ + + G +T S CIL
Sbjct: 1562 LIKSVVQNEEGLTTNEGLKMLVTIS---CIL 1589
>AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhesion
molecule isoform CHD2-42 precursor variant protein.
Length = 2023
Score = 35.9 bits (79), Expect = 0.16
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Frame = +1
Query: 286 GKEVWSSAG----SATSAAFKVKKGGRYQMQVELCNSDGCSSSEGVEIVVADTDGSHLRP 453
G VW++A S + + +++ Y++Q+ +CNS GC+ + + DGS + P
Sbjct: 1528 GTTVWTTAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAEKQ-ANFATLNYDGSTIPP 1586
Query: 454 LDYSIGEKNKPFKQTSGKGWALTSSNGVCIL 546
L S+ + + G +T S CIL
Sbjct: 1587 LIKSVVQNEEGLTTNEGLKMLVTIS---CIL 1614
>AK127158-1|BAC86860.1| 142|Homo sapiens MS1). protein.
Length = 142
Score = 32.7 bits (71), Expect = 1.4
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -1
Query: 331 KRLMWRCRHCSRLPSHRAGFWTCRPRAGP 245
+R+ W HC SHR G WT P GP
Sbjct: 114 RRIPWVTGHCWVQNSHRGGSWTQNPLGGP 142
>AF491813-1|AAM09558.1| 2113|Homo sapiens Down syndrome cell adhesion
molecule 2 protein.
Length = 2113
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 355 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 474
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1607 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1645
>AF334384-1|AAL57166.1| 2053|Homo sapiens Down syndrome cell adhesion
molecule DSCAML1 protein.
Length = 2053
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 355 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 474
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1547 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1585
>AF304305-1|AAN32614.1| 1842|Homo sapiens Down syndrome cell adhesion
molecule like-protein 1b protein.
Length = 1842
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 355 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 474
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1336 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1374
>AF304304-1|AAN32613.1| 2053|Homo sapiens Down syndrome cell adhesion
molecule like-protein 1a protein.
Length = 2053
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 355 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 474
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1547 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1585
>AB032958-1|BAA86446.2| 2092|Homo sapiens KIAA1132 protein protein.
Length = 2092
Score = 32.7 bits (71), Expect = 1.4
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 355 YQMQVELCNSDGCSSSEGVEIVVADTDGSHLRPLDYSIGE 474
Y++++ CNS GC +E + D DGS + P+ + GE
Sbjct: 1586 YELRMRACNSAGC-GNETAQFATLDYDGSTIPPIKSAQGE 1624
>AL023753-3|CAA19295.1| 483|Homo sapiens PRAME family member 12
protein.
Length = 483
Score = 31.9 bits (69), Expect = 2.5
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 212 DAADVSVN-WNVWTGARPTSPESCSMGRKSGAVP-AAPHQPL 331
D +V N W +W+GA SPE+ S R +G P QPL
Sbjct: 104 DLRNVDENFWGIWSGASALSPEALSKRRTAGNCPRPGGQQPL 145
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 31.1 bits (67), Expect = 4.4
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -2
Query: 273 SGLVGRAPVHTFQLT--ETSAASFLVTSWL*AVAAWLTSTIANVRSPQPRFGIPGGPQEP 100
S LVG P T + + S + LVTS + + T T A S P IP P
Sbjct: 611 SPLVGEPPAQTQSTSSWQKSRTTTLVTSSITSTTQTST-TSAPTTSTTPA-SIPSTTSAP 668
Query: 99 TANAATAKTSAIIRCPITGSTKKANK*T*DAP 4
T + +A T++ P T +T T AP
Sbjct: 669 TTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAP 700
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,250,922
Number of Sequences: 237096
Number of extensions: 2493654
Number of successful extensions: 6820
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6820
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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