Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20876
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.1  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 228 ETSAASFLVTSWL*AVAAWLTSTIANVRSPQPR 130
           +    +F+VTSWL  + +++   I  V +P+ R
Sbjct: 653 QPGVTAFIVTSWLGYMNSFVNPVIYTVFNPEFR 685


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 137 WGERTFAIV-EVNQAATAYNQLVTKK-DAADVSVNWNVWTGARPTSPESCS 283
           WG++TF I+ + N   ++ N +  K  +   +   +  WT A+    E+CS
Sbjct: 70  WGDKTFVIIMKFNGVPSSLNVITNKTGNGGPLLAPYPDWTWAK---NENCS 117


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 202 HELVVSCGRLVDFDDRER 149
           H LV + GRL+DF ++ R
Sbjct: 325 HILVATPGRLLDFVEKGR 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,259
Number of Sequences: 438
Number of extensions: 4598
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)