Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20873
(726 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0022 - 9015408-9015467,9015468-9015560,9017326-9017420,901... 37 0.014
07_03_1408 - 26353389-26355191 31 0.70
01_07_0105 - 41104655-41104851,41105818-41107150 31 0.70
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 30 1.6
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991... 30 2.2
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377... 30 2.2
12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797 29 2.8
04_04_0861 + 28836544-28836609,28838191-28838264,28838551-288386... 29 2.8
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 29 2.8
12_01_0618 - 5099021-5099668,5099701-5100221,5100311-5100352,510... 29 3.8
07_03_1311 + 25687434-25687884,25689313-25689566,25689632-256902... 29 5.0
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 29 5.0
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 29 5.0
07_03_0370 - 17366063-17366197,17367445-17367483,17367930-173680... 28 6.6
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 28 6.6
06_01_0203 + 1555471-1555523,1555743-1555863,1556340-1556651,155... 28 8.7
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 28 8.7
>11_03_0022 -
9015408-9015467,9015468-9015560,9017326-9017420,
9018019-9018079,9018601-9018620,9018743-9018824,
9018919-9019020,9019116-9019532
Length = 309
Score = 37.1 bits (82), Expect = 0.014
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 RERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKRTFLDTLMGQ 434
+E+ L KIAT+GVV+LFN+V Q + K ++ S K K+L K K+ FL L
Sbjct: 189 KEKELIKIATQGVVRLFNSVSKAQ-NCRKGLNP---SRSKDAKVLAKETKQAFLTELSKT 244
Query: 435 SKSIVVDEHVKSL-KDEVKDETDRP 506
S + + K+ KDE D P
Sbjct: 245 SNQSQKGKASSNFSKNNSKDE-DEP 268
Score = 35.1 bits (77), Expect = 0.057
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 509 WNALRDDFMMGAKMKDWDKESV 574
W LR+ +M+G+K+KDWDK V
Sbjct: 270 WAPLRETYMLGSKLKDWDKMQV 291
>07_03_1408 - 26353389-26355191
Length = 600
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 91 VKKVKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKEEK 261
VKK+K E+ + EV GE +E + K KK++ +VK EK I V +++K
Sbjct: 499 VKKIKVEESAEEVEGEKSEKKKKKKKDKGEQGSGDAEVKEEKADISDGEKVGSEKKK 555
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/78 (20%), Positives = 36/78 (46%)
Frame = +1
Query: 28 SSKPKNKKTLVLSRAKKHSEIVKKVKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVK 207
++ P+ K E+ +K K++K E + K++ ++ + P KK+K
Sbjct: 444 AAAPEEAKVKAEQDVVATEEVKEKKKKKKHKDEEDAADEGRKRKIEDDDASASVPVKKIK 503
Query: 208 HEKPSIRIKPNVLEKEEK 261
E+ + ++ EK++K
Sbjct: 504 VEESAEEVEGEKSEKKKK 521
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 31.5 bits (68), Expect = 0.70
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +1
Query: 46 KKTLVLSRAKKHSEIVKKVKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPSI 225
+KT + AK VKK+ EEK E + + KKE++ A K E +
Sbjct: 111 EKTTTAAAAKATPAAVKKIVEEKKKEEAKNKQEAVTDDKKKEKVIPTKVAIDEKKEDVVV 170
Query: 226 RIKPNVLEKEEK 261
+K ++++EK
Sbjct: 171 PMKEEFVKEKEK 182
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 103 KEEKPSFEVIGEVNEIESKVKK----EEINVEPPAKKVKHEKPSIRIKPNVLEKEEK 261
K E + V++ E K+ E INVE KV+ E+ I + E+EEK
Sbjct: 343 KSNNGEMEAVAGVDQAEDAKKETSNIEAINVEQEEIKVEEEEEKIIVSQETEEEEEK 399
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 4 DSISKILGSSKPKNKKTLVLSRAKKHSEIVKKVKEEKPSFEVIGEVNEIESKVKKEEINV 183
D I K + + K K + V+ E KKVK++ P +V +E +S +EE+
Sbjct: 34 DEIEKAVSAKKQKTVREKVVPS----KEEAKKVKKQPPPKKVESSSSEEDSSESEEEVKA 89
Query: 184 EPPAKKVKHEK 216
+ P K V+ +K
Sbjct: 90 Q-PKKTVQPKK 99
>12_01_0978 +
9908001-9908175,9908538-9908619,9910793-9910904,
9911965-9913737
Length = 713
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/80 (30%), Positives = 38/80 (47%)
Frame = +3
Query: 237 KRLRKGRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKRTFL 416
K++ R + L IAT +L +A QK E+E L E K+++ ++ L
Sbjct: 357 KKIEDARAQDLESIATVST-ELDDAKEMLQKVAEEESSLRSLVESLKQELEAVKEEHDQL 415
Query: 417 DTLMGQSKSIVVDEHVKSLK 476
+++SIV D HVK K
Sbjct: 416 KQKDTETESIVGDLHVKLQK 435
>01_05_0619 -
23737178-23737378,23737460-23737516,23737597-23737755,
23739477-23739621,23739725-23740136,23740693-23740855
Length = 378
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/56 (30%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = +3
Query: 336 EKEMDRNDLSEGKKEKILKKFDKRTFLDTLMGQSKSIVVDEHVKSLKD-EVKDETD 500
EKE + +++ + EK+L+ +KR L +L + + +VVD+ ++S++ VK ++D
Sbjct: 234 EKEPEDKEMTLEEYEKVLE--EKRKALLSLKVEERKVVVDKELQSMQQLSVKKDSD 287
>12_01_0619 - 5102970-5103750,5103825-5104065,5104794-5104797
Length = 341
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 339 KEMDRNDLSEGKKEKIL--KKFDKRTFLDTLMGQSKSIVVDEHVKSLKDEVKDETDR 503
K M + + K KI+ ++ DK L T++ + K V +EH+KS+ E KD+ +R
Sbjct: 215 KTMLVEEKDKNKHHKIILEEEKDKNERLKTMLSEEK--VKNEHLKSMLAEEKDKNER 269
>04_04_0861 +
28836544-28836609,28838191-28838264,28838551-28838671,
28838832-28839143,28839241-28839345,28839447-28839901,
28840116-28840417,28840589-28840767,28841256-28841446,
28841595-28841728,28841875-28842113
Length = 725
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +3
Query: 228 N*AKRLRKGRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKR 407
N + L + R LL + V QL A R + + K + D++ KILKKFDKR
Sbjct: 104 NRIEELGEQRAALLEQHDISQVFQLREAYREVGRDLIKLLRFVDMNATGIRKILKKFDKR 163
>01_06_0358 -
28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +1
Query: 64 SRAKKHSEIVKKVKEEKPSFEV--IGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIK 234
S K++SEI+ E +P FEV + +V S V KE +N P +E S+ ++
Sbjct: 579 SLPKENSEILDDALELEPKFEVQALADVGFHSSGVDKEMVNPLSPEATSNNELDSVELE 637
>12_01_0618 -
5099021-5099668,5099701-5100221,5100311-5100352,
5100905-5100962
Length = 422
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/67 (26%), Positives = 38/67 (56%)
Frame = +3
Query: 324 QKSIEKEMDRNDLSEGKKEKILKKFDKRTFLDTLMGQSKSIVVDEHVKSLKDEVKDETDR 503
Q+++E + + E + ++++ +K L T++ + K +EH K++ +E KD+ +R
Sbjct: 305 QQAVEVILTQTSEVEHLRATLVEEANKIGDLKTMLVEEKD--KNEHHKTMLEEEKDKNER 362
Query: 504 PNGML*E 524
N ML E
Sbjct: 363 LNTMLVE 369
>07_03_1311 +
25687434-25687884,25689313-25689566,25689632-25690252,
25690684-25690836
Length = 492
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -2
Query: 194 AGGSTLISSFLTFDSISFTSPITSKLGFSSFTFFTISECFL 72
AGG +S + ++ F +T ++G ++ FFT S C L
Sbjct: 92 AGGVPPVSFVVADGAMGFAVHVTKEMGIPTYLFFTHSACGL 132
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 133 GEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLEKEEKD 264
G V+ I + ++V P V+H KP+I+ +EK+EK+
Sbjct: 248 GSVSHIHRSNSQNSVDVPPEPSAVQHPKPTIQ---QSVEKQEKE 288
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 28.7 bits (61), Expect = 5.0
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 34 KPKNKKTLVLSRAKKHSEIVKKVKEEKPS-FEVIGEVNEI-ESKVKKEEINVEPPAKKVK 207
K N+K + + K V+K++ + E G +N+I E+ VK E+ E K +
Sbjct: 300 KEDNEKEIAAATEKAVGIKVQKLQAKLDKCMEETGFLNDIHENLVKNMEMWRERIQKVKE 359
Query: 208 HEKPSIRIKPNVLEKEEKD 264
E+ +IR+K +EK E++
Sbjct: 360 REQAAIRLKDEKIEKLEEE 378
>07_03_0370 -
17366063-17366197,17367445-17367483,17367930-17368001,
17368287-17368478,17368660-17368781,17369394-17369496,
17370786-17370836,17371199-17371275,17371646-17371757
Length = 300
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 237 KRLRKGRERLLN--KIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKRT 410
++LR+ + +L N ++ + + + +N +KSI + RND+ K+L +++RT
Sbjct: 16 QQLREWQRKLRNECRVLDRQIRDVQREEKNVEKSIREAAKRNDIGSA---KLLSNYEQRT 72
Query: 411 FL 416
L
Sbjct: 73 LL 74
>06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/64 (23%), Positives = 31/64 (48%)
Frame = +1
Query: 34 KPKNKKTLVLSRAKKHSEIVKKVKEEKPSFEVIGEVNEIESKVKKEEINVEPPAKKVKHE 213
KP K + + + K+ +E+K S E + +E ++++E + +P V +
Sbjct: 1174 KPSEKDDAGTKQTEDPVTLEKEPEEDKGSVEPTQDNAGLEKPLEEDEASAKPSEDSVVLD 1233
Query: 214 KPSI 225
KPS+
Sbjct: 1234 KPSV 1237
>06_01_0203 +
1555471-1555523,1555743-1555863,1556340-1556651,
1556806-1556910,1557009-1557466,1557886-1558187,
1558300-1558481,1558893-1559083,1559248-1559381,
1559487-1559725
Length = 698
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 237 KRLRKGRERLLNKIATKGVVQLFNAVRNQQKSIEKEMDRNDLSEGKKEKILKKFDKR 407
++L K R L + + +L A R + K + DL+ KILKKFDKR
Sbjct: 78 EKLGKQRAILAEQPDISAIAELREAYREVGLDLIKLLKFVDLNATGIRKILKKFDKR 134
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 79 HSEIVKKVKE--EKP-SFEVIGEVNEIESKVKKEEINVEPPAKKVKHEKPSIRIKPNVLE 249
H+E VKK + +KP S ++G E+ K + E+ V A++ + RIK E
Sbjct: 1076 HAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDE 1135
Query: 250 KEEK 261
K+ K
Sbjct: 1136 KKAK 1139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,759,536
Number of Sequences: 37544
Number of extensions: 257929
Number of successful extensions: 826
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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