Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20872
(622 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 159 7e-38
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 93 4e-18
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 78 2e-13
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 76 8e-13
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 74 3e-12
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 72 1e-11
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 72 1e-11
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 70 5e-11
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 69 7e-11
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 68 2e-10
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 68 2e-10
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 68 2e-10
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 66 5e-10
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 64 2e-09
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 62 1e-08
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 60 3e-08
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 60 3e-08
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 60 6e-08
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 58 1e-07
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 58 2e-07
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 57 3e-07
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 57 3e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 54 2e-06
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 52 8e-06
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 50 4e-05
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 49 8e-05
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 48 2e-04
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 47 3e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 3e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 47 4e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 6e-04
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 46 7e-04
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 46 7e-04
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 45 0.001
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.002
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 45 0.002
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 44 0.002
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 42 0.009
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.009
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 42 0.012
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.016
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.021
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.021
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 41 0.027
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.048
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.048
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.048
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.048
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.048
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 40 0.048
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 40 0.063
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 39 0.084
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 39 0.11
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 39 0.11
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.11
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 38 0.15
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.15
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 38 0.19
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.19
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 38 0.19
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.19
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 38 0.26
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 37 0.34
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.34
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.59
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.59
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 0.78
UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033... 36 0.78
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 36 1.0
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 36 1.0
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 1.0
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 36 1.0
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 35 1.8
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.8
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.8
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 35 1.8
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 35 1.8
UniRef50_Q6AJU9 Cluster: Related to two-component system respons... 34 2.4
UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella ve... 34 2.4
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 3.1
UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep... 34 3.1
UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein pr... 33 4.2
UniRef50_Q23YJ1 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 5.5
UniRef50_UPI00015555FA Cluster: PREDICTED: hypothetical protein;... 33 7.3
UniRef50_A5P922 Cluster: Bacteriophage N4 receptor, inner membra... 32 9.6
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 9.6
UniRef50_Q55FC8 Cluster: Putative uncharacterized protein; n=1; ... 32 9.6
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 32 9.6
UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1; Met... 32 9.6
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 159 bits (385), Expect = 7e-38
Identities = 77/84 (91%), Positives = 81/84 (96%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RLVRIGVLDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRK
Sbjct: 80 RLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRK 139
Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
QVVNIPSFIVRLDS KHIDFSL+S
Sbjct: 140 QVVNIPSFIVRLDSQKHIDFSLRS 163
Score = 136 bits (329), Expect = 4e-31
Identities = 63/71 (88%), Positives = 69/71 (97%)
Frame = +2
Query: 41 VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 220
V KTYVTPRRPFEK+RLDQELK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTL+EKD
Sbjct: 8 VCRKTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKD 67
Query: 221 PKRLFEGNALL 253
P+RLFEGNALL
Sbjct: 68 PRRLFEGNALL 78
Score = 34.3 bits (75), Expect = 2.4
Identities = 13/16 (81%), Positives = 15/16 (93%)
Frame = +3
Query: 510 FGGGRPGRVKRKNLRK 557
+GGGRPGRVKRKN +K
Sbjct: 165 YGGGRPGRVKRKNAKK 180
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 93.5 bits (222), Expect = 4e-18
Identities = 44/74 (59%), Positives = 59/74 (79%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RL +G+L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V K
Sbjct: 79 RLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGK 138
Query: 436 QVVNIPSFIVRLDS 477
QVV++PSF+VR++S
Sbjct: 139 QVVDVPSFLVRVES 152
Score = 81.4 bits (192), Expect = 2e-14
Identities = 36/69 (52%), Positives = 50/69 (72%)
Frame = +2
Query: 47 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 226
S TY TP+ P+E+ R D ELK++G++GL+NK+E+ RV Y L +R A+ +L + KDPK
Sbjct: 9 SITYKTPKVPYERERFDAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPK 68
Query: 227 RLFEGNALL 253
RL EG ALL
Sbjct: 69 RLLEGAALL 77
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 77.8 bits (183), Expect = 2e-13
Identities = 39/70 (55%), Positives = 50/70 (71%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 223
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 224 KRLFEGNALL 253
+R+FEG ALL
Sbjct: 59 RRIFEGEALL 68
Score = 70.5 bits (165), Expect = 3e-11
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +1
Query: 265 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 423
R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 75.8 bits (178), Expect = 8e-13
Identities = 33/58 (56%), Positives = 44/58 (75%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 208
P K+Y TP+RPFEK R+++E +++ EYGLRNKREVW+ + L + RKAARELL L
Sbjct: 4 PGKNHKSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLAL 61
Score = 54.4 bits (125), Expect = 2e-06
Identities = 36/104 (34%), Positives = 54/104 (51%)
Frame = +1
Query: 253 TRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 432
+ + R G+L +D VL LK+ LERRLQT V++ GLA+S AR L+ HI +
Sbjct: 80 SHMQRAGLLGP-DADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIG 138
Query: 433 KQVVNIPSFIVRLDSGKHIDFSLKSHSVEVVLDVSRGRTSARTG 564
+ V +P ++V I ++ KS V+ R R + TG
Sbjct: 139 GRRVTVPGYLVTRGEETTISYAGKSPFVD-ASHAERTRITRPTG 181
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 73.7 bits (173), Expect = 3e-12
Identities = 35/67 (52%), Positives = 49/67 (73%)
Frame = +1
Query: 298 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 477
L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I ++ Q+V++P F+VR D
Sbjct: 98 LNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADK 157
Query: 478 GKHIDFS 498
I+++
Sbjct: 158 EPLIEYN 164
Score = 56.0 bits (129), Expect = 7e-07
Identities = 26/53 (49%), Positives = 37/53 (69%)
Frame = +2
Query: 47 SKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 205
SK TPR PFEK RL +E +++G YGL+NK E+W ++ A+ ++ AR LLT
Sbjct: 7 SKRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT 59
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 71.7 bits (168), Expect = 1e-11
Identities = 36/89 (40%), Positives = 60/89 (67%)
Frame = -2
Query: 507 RFQREVNVLARVQAHNK*WDVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEV 328
R EVNVL R Q+ ++ WDV +LL ++N+ L DQ+S +++ L Q L LQ++ QE+
Sbjct: 30 RGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDLGLQSSFQEI 89
Query: 327 LNLQTKHIIEFHLFFIQYSNTNQTSRRAL 241
NLQ++ II+ L F Q +N++Q+S +++
Sbjct: 90 FNLQSQDIIQLLLVFRQDTNSHQSSDQSI 118
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 71.7 bits (168), Expect = 1e-11
Identities = 31/59 (52%), Positives = 43/59 (72%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 211
P K Y TP+RPFE +R+++E +++ EYGLRNKREVW K L + RKAARE++ L+
Sbjct: 4 PGKNHKQYQTPKRPFELSRIEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQ 62
Score = 56.4 bits (130), Expect = 5e-07
Identities = 32/80 (40%), Positives = 45/80 (56%)
Frame = +1
Query: 259 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 438
L R G+L E +D VL LK+E L+RRLQTQV++ G A+S AR I HI + +
Sbjct: 82 LQRSGMLSENA-DIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGR 140
Query: 439 VVNIPSFIVRLDSGKHIDFS 498
V IP + V + I ++
Sbjct: 141 RVTIPGYTVSAKEQEEISYA 160
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 69.7 bits (163), Expect = 5e-11
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +1
Query: 298 LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDS 477
L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN PSF+VR D+
Sbjct: 95 LESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNKPSFLVRKDN 154
Query: 478 GKHIDFSLKS 507
I FSL S
Sbjct: 155 EIFISFSLNS 164
Score = 65.7 bits (153), Expect = 8e-10
Identities = 32/90 (35%), Positives = 54/90 (60%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 223
+SK + P+ P+EK RL E+++I +GL+NKRE+WR ++ L+++RK A +L+ + K
Sbjct: 10 YSKIWNRPKNPYEKLRLCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLE 69
Query: 224 KRLFEGNALLLVWFVLEYWMKNR*NSIMCL 313
K + ++WF +Y N N CL
Sbjct: 70 K--IPSQSYGILWFCYKYNFMN--NMTFCL 95
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 69.3 bits (162), Expect = 7e-11
Identities = 42/86 (48%), Positives = 54/86 (62%), Gaps = 6/86 (6%)
Frame = +1
Query: 256 RLVRIGVLDEKQMK------LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQR 417
+LV G+L E +MK + GL+I F E++LQTQVF+ L KSI HA +L+
Sbjct: 80 QLVHTGLLGEGKMKPRRSWFTSWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHC 138
Query: 418 HIRVRKQVVNIPSFIVRLDSGKHIDF 495
HIR+ KQVV+I F V LDS KH DF
Sbjct: 139 HIRIGKQVVDIAFFFVGLDSRKHTDF 164
Score = 50.8 bits (116), Expect = 3e-05
Identities = 26/38 (68%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +2
Query: 143 EVWRVKYTLARIRKAARE-LLTLEEKDPKRLFEGNALL 253
EVWRVK+TL +IRKA E LL L EKDP+ LFE N LL
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLL 78
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 68.1 bits (159), Expect = 2e-10
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L R+G++++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI +
Sbjct: 76 KLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGG 135
Query: 436 QVVNIPSFIVRLDSGKHIDF 495
+ V P +IV IDF
Sbjct: 136 RRVTSPGYIVMRGEEDLIDF 155
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/58 (37%), Positives = 34/58 (58%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 208
P + + P P+ + L++E +IG+YGLRNKRE+W + + + R AR LL L
Sbjct: 4 PKKSRRKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLAL 61
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/70 (45%), Positives = 47/70 (67%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L ++G +++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V
Sbjct: 78 KLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAG 137
Query: 436 QVVNIPSFIV 465
+ V P F+V
Sbjct: 138 RRVTSPGFLV 147
Score = 50.4 bits (115), Expect = 3e-05
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +2
Query: 65 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLEEKDP 223
P++ + K L +EL+++GEYGLRNK+E+W + L I + AR LL T EE+ P
Sbjct: 16 PKKIWNKQLLLEELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAP 70
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/81 (44%), Positives = 53/81 (65%)
Frame = +1
Query: 253 TRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 432
T+L ++GVL E +LD VL L ++D LERRLQT + + GLAK++ AR I HI V
Sbjct: 74 TKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVN 132
Query: 433 KQVVNIPSFIVRLDSGKHIDF 495
+VV+ PS++V+ + I+F
Sbjct: 133 GEVVDAPSYLVKKEEEDKIEF 153
Score = 41.5 bits (93), Expect = 0.016
Identities = 20/50 (40%), Positives = 32/50 (64%)
Frame = +2
Query: 65 PRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 214
P P++K RL E +++ EYGL+NKRE+W + T+AR +A L ++
Sbjct: 11 PSHPWQKQRLIIEKRLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQ 59
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 66.5 bits (155), Expect = 5e-10
Identities = 36/83 (43%), Positives = 50/83 (60%)
Frame = +1
Query: 259 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 438
L + G+L + LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +
Sbjct: 78 LKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGR 137
Query: 439 VVNIPSFIVRLDSGKHIDFSLKS 507
VV PS++V ++ I ++ S
Sbjct: 138 VVTAPSYMVTVEEEDKISYAKNS 160
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/54 (44%), Positives = 37/54 (68%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 205
F KTY TP P+ K R+++E ++ +YGLR KREVW+ + L + R+ AR L++
Sbjct: 8 FKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS 61
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/55 (52%), Positives = 38/55 (69%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAREL 199
P K Y TPR P+EK R+D+E KI+ +YGL+NKRE+WR + L+ IR AR L
Sbjct: 4 PKFHHKKYSTPRHPWEKDRIDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYL 58
Score = 54.8 bits (126), Expect = 2e-06
Identities = 33/70 (47%), Positives = 41/70 (58%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RL R +L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI V
Sbjct: 79 RLSRYKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNG 137
Query: 436 QVVNIPSFIV 465
+ V +P +V
Sbjct: 138 RRVTVPGMLV 147
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 61.7 bits (143), Expect = 1e-08
Identities = 30/81 (37%), Positives = 48/81 (59%)
Frame = +1
Query: 253 TRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVR 432
++L+R G++ + +D +L LK E+ LERRLQTQV + GLA+++ AR I HI +
Sbjct: 84 SKLIRYGII-KADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAIN 142
Query: 433 KQVVNIPSFIVRLDSGKHIDF 495
+ IP +V + HI +
Sbjct: 143 GRKATIPGMLVSKEDEMHIGY 163
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/56 (46%), Positives = 38/56 (67%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 202
P SK+Y TPR P+++AR+ E++++ YGLRNK+EVW+ L R AR+LL
Sbjct: 4 PGKKSKSYETPRHPWQEARMAAEVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLL 59
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 60.5 bits (140), Expect = 3e-08
Identities = 33/71 (46%), Positives = 43/71 (60%)
Frame = +1
Query: 259 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 438
L R G+L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V +
Sbjct: 77 LNRYGILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGK 136
Query: 439 VVNIPSFIVRL 471
+N PS++V L
Sbjct: 137 KINAPSYLVPL 147
Score = 54.4 bits (125), Expect = 2e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 205
P SKTY TP P+ R+ QE ++ +YGL NK+E+W+++ L R+ AR+L++
Sbjct: 4 PRRLSKTYDTPNHPWIGERIKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLIS 60
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 60.5 bits (140), Expect = 3e-08
Identities = 33/80 (41%), Positives = 48/80 (60%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RL RIG+L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V
Sbjct: 73 RLQRIGILSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDG 131
Query: 436 QVVNIPSFIVRLDSGKHIDF 495
V PS+ V + + F
Sbjct: 132 SRVTEPSYTVPVSEENTLAF 151
Score = 52.0 bits (119), Expect = 1e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 32 VPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 202
+P +K Y TP P++ R+ +E ++ YGL+NK E+WR + L R+ AR LL
Sbjct: 3 LPGENTKFYETPNHPYQGERIAEESDLLSRYGLKNKEELWRAQSELRDYRREARRLL 59
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 59.7 bits (138), Expect = 6e-08
Identities = 26/30 (86%), Positives = 30/30 (100%)
Frame = +2
Query: 146 VWRVKYTLARIRKAARELLTLEEKDPKRLF 235
VWRVK+TLA+IRKAARELLTL+EKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 58.4 bits (135), Expect = 1e-07
Identities = 31/79 (39%), Positives = 45/79 (56%)
Frame = +1
Query: 259 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 438
LVR G + KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + +
Sbjct: 77 LVRAGFISPNA-KLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGK 135
Query: 439 VVNIPSFIVRLDSGKHIDF 495
+N P +V ++IDF
Sbjct: 136 KINAPGHLVEKADEENIDF 154
Score = 49.2 bits (112), Expect = 8e-05
Identities = 19/54 (35%), Positives = 35/54 (64%)
Frame = +2
Query: 50 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLE 211
K Y TP P+ R+ +E ++ +YGL+NK+E+W+ + + R R+ AR +L ++
Sbjct: 9 KQYDTPSHPWNADRIKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMD 62
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 58.0 bits (134), Expect = 2e-07
Identities = 28/70 (40%), Positives = 44/70 (62%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L +G+L E KL+ VL LK++D +ERRLQT +++ G A SI AR I HI +
Sbjct: 83 KLQTLGILKE-DAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNG 141
Query: 436 QVVNIPSFIV 465
+ + +P ++V
Sbjct: 142 RKITVPGYLV 151
Score = 57.6 bits (133), Expect = 2e-07
Identities = 25/56 (44%), Positives = 35/56 (62%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 202
P K Y TP P++KAR+D+E ++ +YGLRNK+ VW+ L + R AR LL
Sbjct: 4 PGQAKKLYDTPNHPWQKARIDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALL 59
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 57.2 bits (132), Expect = 3e-07
Identities = 32/55 (58%), Positives = 34/55 (61%)
Frame = -3
Query: 494 KSMCLPESRRTINDGMFTTCLRTRICLCRIKILA*WMDFARPALNTCVCRRRSKK 330
KSMC S RT G FT CL TRI RIK A D ARP+L T VC+RRSKK
Sbjct: 64 KSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKTSVCKRRSKK 118
Score = 34.7 bits (76), Expect = 1.8
Identities = 18/35 (51%), Positives = 24/35 (68%)
Frame = -1
Query: 154 APYFTLVAETVLSDDLQLLVKTCLFKRTTRCHVRL 50
AP +LVA+ L+DDLQL V+ L +RT+R RL
Sbjct: 167 APQLSLVAKAELTDDLQLGVEAILLERTSRLLERL 201
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 57.2 bits (132), Expect = 3e-07
Identities = 33/70 (47%), Positives = 44/70 (62%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
R+V+ G+L E L+ VL + FLERRLQT VFK GLA++I AR LI I V
Sbjct: 74 RMVKFGIL-ENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNM 132
Query: 436 QVVNIPSFIV 465
+ V+IP ++V
Sbjct: 133 KRVSIPGYMV 142
Score = 40.3 bits (90), Expect = 0.036
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +2
Query: 50 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLT 205
+ Y P+ + AR+ + +I EYGL N E+W+V+ ++R+R R LL+
Sbjct: 9 RKYDKPKDIWNLARIKADNALIAEYGLANMHELWKVQSEISRLRGNVRVLLS 60
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 280 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 387
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 54.4 bits (125), Expect = 2e-06
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 492
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 493 FSLKSHSVEVVLDVSRGRTSARTGW 567
+S ++ +VL + +R W
Sbjct: 143 IKPESLNLPIVLGTLQDLPLSRPEW 167
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 52.4 bits (120), Expect = 8e-06
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = +2
Query: 35 PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 214
P + + + P+RPF +EL+ +G +GLR KRE+W+ L+R+R AR LL L +
Sbjct: 4 PKLPRRMWRKPKRPFNYDLKMEELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQ 63
Query: 215 KDPKR 229
+ +R
Sbjct: 64 EVRER 68
Score = 50.0 bits (114), Expect = 4e-05
Identities = 34/100 (34%), Positives = 50/100 (50%)
Frame = +1
Query: 259 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 438
L RIG++ K LD VL L++ D L RRLQT V K + + AR + HI + +
Sbjct: 77 LARIGLVG-KDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDR 135
Query: 439 VVNIPSFIVRLDSGKHIDFSLKSHSVEVVLDVSRGRTSAR 558
VV IPS+ V ++ I + S ++ R +AR
Sbjct: 136 VVTIPSYTVYVEEEGDIKLTGGSAFATILEKSKRAEAAAR 175
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 50.0 bits (114), Expect = 4e-05
Identities = 29/75 (38%), Positives = 41/75 (54%)
Frame = +1
Query: 307 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 486
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 487 IDFSLKSHSVEVVLD 531
I+F KS +++ V D
Sbjct: 140 IEFRQKSRNLDAVAD 154
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 49.2 bits (112), Expect = 8e-05
Identities = 30/84 (35%), Positives = 48/84 (57%)
Frame = +1
Query: 274 VLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 453
+ +E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI
Sbjct: 67 IYEEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIA 125
Query: 454 SFIVRLDSGKHIDFSLKSHSVEVV 525
SF V++ G + S +VE++
Sbjct: 126 SFRVKV--GDIVSVIENSKNVELI 147
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 48.0 bits (109), Expect = 2e-04
Identities = 26/87 (29%), Positives = 45/87 (51%)
Frame = +1
Query: 307 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 486
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ L G
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSY--SLKPGDI 138
Query: 487 IDFSLKSHSVEVVLDVSRGRTSARTGW 567
+ +S S+E + + GR + + W
Sbjct: 139 VSVRERSKSLEAITNSLAGRGANKYSW 165
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 47.2 bits (107), Expect = 3e-04
Identities = 23/53 (43%), Positives = 32/53 (60%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELL 202
+ KT+ R + K LD ELK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 119 YGKTFKESRSSYGKGFLDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 3e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +1
Query: 310 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 468
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 46.8 bits (106), Expect = 4e-04
Identities = 29/80 (36%), Positives = 43/80 (53%)
Frame = +1
Query: 286 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 466 RLDSGKHIDFSLKSHSVEVV 525
+ I ++K S+++V
Sbjct: 152 K--PKDVISVAMKQRSLQLV 169
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 6e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = +1
Query: 307 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 46.0 bits (104), Expect = 7e-04
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Frame = +1
Query: 283 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 462
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 463 VRLDSGKHIDFSLKSHS-VEVVLDVSRGRT 549
VR + S +S + V+ LD +RG T
Sbjct: 137 VRPGDVVSLKDSSRSKALVQRFLDGARGET 166
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 46.0 bits (104), Expect = 7e-04
Identities = 28/75 (37%), Positives = 41/75 (54%)
Frame = +1
Query: 307 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 486
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 487 IDFSLKSHSVEVVLD 531
I KS + V+D
Sbjct: 146 ISLREKSRANAGVVD 160
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 45.2 bits (102), Expect = 0.001
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHS 513
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKSRK 143
Query: 514 VEVVLD 531
E+ ++
Sbjct: 144 TEMFVN 149
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.002
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +1
Query: 286 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 466 R 468
+
Sbjct: 113 K 113
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 492
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 493 FSLKSHSVEVV 525
KS + +
Sbjct: 147 IKEKSRDIPFI 157
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 44.4 bits (100), Expect = 0.002
Identities = 27/73 (36%), Positives = 41/73 (56%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 492
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 493 FSLKSHSVEVVLD 531
KS +++ V D
Sbjct: 142 LRDKSKNLQQVKD 154
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 42.3 bits (95), Expect = 0.009
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 492
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 493 FSLKSHSVEVVLDVSRGRTSART 561
F +H V+ S R +R+
Sbjct: 147 FH-AAHQKLAVVQESFSRMKSRS 168
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.009
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = +1
Query: 283 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 41.9 bits (94), Expect = 0.012
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +1
Query: 427 VRKQVVNIPSFIVRLDSGKHIDFSLKS 507
V +Q+VNIPSFIVRL+S KHI FSL S
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTS 53
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.016
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.021
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = +1
Query: 283 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 462
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 463 VRL 471
VR+
Sbjct: 135 VRV 137
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 41.1 bits (92), Expect = 0.021
Identities = 25/72 (34%), Positives = 36/72 (50%)
Frame = +1
Query: 331 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSH 510
F RRL T + + + + A I Q HIRV VVNIP++ V + HI ++ S
Sbjct: 116 FCRRRLATVLVQRKFCEHLKQAVTYIEQGHIRVGLDVVNIPAYHVTRELEDHITWAQGSK 175
Query: 511 SVEVVLDVSRGR 546
E V+D + R
Sbjct: 176 IKEKVVDFTGAR 187
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 40.7 bits (91), Expect = 0.027
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +1
Query: 277 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 456
L+ KQ + G LE RL +F G+A +I AR L+ RHI V +V+IPS
Sbjct: 35 LEAKQRRTRGSTGQVPLQLLEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPS 94
Query: 457 F 459
+
Sbjct: 95 Y 95
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.048
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = +1
Query: 286 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 466 R 468
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.048
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.048
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +1
Query: 295 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 462
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.048
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 328 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 471
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.048
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 39.9 bits (89), Expect = 0.048
Identities = 22/77 (28%), Positives = 41/77 (53%)
Frame = +1
Query: 295 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 474
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISL- 140
Query: 475 SGKHIDFSLKSHSVEVV 525
G ++ ++H++ +V
Sbjct: 141 -GSVVELKPRAHNLPLV 156
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 39.5 bits (88), Expect = 0.063
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHS 513
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F S
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISFKEGSMK 201
Query: 514 VEVVLDVSRGRTS--ARTGWRSAN 579
+++ + +G S +R W + N
Sbjct: 202 RKLLKRLKKGLISKKSRKRWTNRN 225
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 39.1 bits (87), Expect = 0.084
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Frame = +1
Query: 277 LDEKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 441
L E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +
Sbjct: 59 LKENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSIL 118
Query: 442 VNIPSFIV 465
V PSFI+
Sbjct: 119 VKKPSFIL 126
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 38.7 bits (86), Expect = 0.11
Identities = 25/66 (37%), Positives = 35/66 (53%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHS 513
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKAQE 149
Query: 514 VEVVLD 531
+ +VL+
Sbjct: 150 MALVLE 155
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 38.7 bits (86), Expect = 0.11
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHS 513
LE RL V++ G A + AR L+ H V + VNIPS+++R ++ KS
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR--PNDVVEVREKSRD 153
Query: 514 VEVV 525
+EV+
Sbjct: 154 LEVI 157
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.11
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 38.3 bits (85), Expect = 0.15
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 492
G + LERRL V++A ++ AR + H+ V + VNIPS+ R+ G I+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSY--RVKEGDVIE 142
Query: 493 FSLKSHSVEVVLD 531
+S + VL+
Sbjct: 143 VRERSKQLASVLE 155
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 38.3 bits (85), Expect = 0.15
Identities = 25/78 (32%), Positives = 41/78 (52%)
Frame = +1
Query: 283 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 462
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSF- 134
Query: 463 VRLDSGKHIDFSLKSHSV 516
R+ G+ + +S ++
Sbjct: 135 -RVGEGQLVHVHSRSETM 151
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 37.9 bits (84), Expect = 0.19
Identities = 21/72 (29%), Positives = 37/72 (51%)
Frame = +1
Query: 331 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSH 510
F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S I ++ S
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164
Query: 511 SVEVVLDVSRGR 546
+ V+D + R
Sbjct: 165 IKKHVMDYNNTR 176
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.19
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 468
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 37.9 bits (84), Expect = 0.19
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHI-DFSLKSH 510
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V + + + S K+
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNS 149
Query: 511 SVEVVLDVS 537
++ L+VS
Sbjct: 150 AIAESLEVS 158
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.19
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 37.5 bits (83), Expect = 0.26
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RL +GV+ + L + + DF RRL V + + A LI+Q HI+V
Sbjct: 81 RLYDLGVIILPEKGLHMIDVIHASDFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGP 140
Query: 436 QVVNIPSFIV 465
V+ P++IV
Sbjct: 141 DVIRNPAYIV 150
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 37.1 bits (82), Expect = 0.34
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 492
G ++ LE RL V++ G A S AR +R H++V + V+IPS+ R+ ++
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY--RISENDIVE 146
Query: 493 FSLKSHSVE--VVLDVSRGRTSARTGW 567
+ K+ + +V + G+ A W
Sbjct: 147 IAPKARELTPFIVARETAGQGRAVPAW 173
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.34
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = +1
Query: 307 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 468
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.59
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 36.3 bits (80), Expect = 0.59
Identities = 20/70 (28%), Positives = 35/70 (50%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L +GVL K D + + RRL + + +A++I A I Q H+RV
Sbjct: 81 KLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGP 140
Query: 436 QVVNIPSFIV 465
++N P+++V
Sbjct: 141 NLINDPAYLV 150
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 35.9 bits (79), Expect = 0.78
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L +G++ K L+ + F RRL + + +++++ HA +I H+RV
Sbjct: 81 KLYVLGLIPTK-WDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGT 139
Query: 436 QVVNIPSFIV 465
VV P+F+V
Sbjct: 140 DVVKDPAFLV 149
>UniRef50_P36128 Cluster: Putative uncharacterized protein YKR033C;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YKR033C - Saccharomyces
cerevisiae (Baker's yeast)
Length = 141
Score = 35.9 bits (79), Expect = 0.78
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 448 CSQLACGHEYAFAGSKFWHDGWTSPGQL*TPASAD 344
CS L H +FWH GW+SP Q TPA+A+
Sbjct: 90 CSSLL--HRGVLTVKQFWHVGWSSPSQSSTPAAAE 122
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 35.5 bits (78), Expect = 1.0
Identities = 26/80 (32%), Positives = 37/80 (46%)
Frame = +1
Query: 226 EIVRR*CPSTRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 405
E+ RR S L +GV+D Q LD + L L RRL + K + + I
Sbjct: 72 ELTRR--LSRILYDMGVVDNAQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRF 129
Query: 406 IRQRHIRVRKQVVNIPSFIV 465
++Q H+RV VV P+ V
Sbjct: 130 VKQGHVRVGPNVVVNPALHV 149
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 35.5 bits (78), Expect = 1.0
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +1
Query: 328 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 471
+ LE+RL VF+ G A SI AR L+ + V + VNI S I+++
Sbjct: 91 NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQIIKV 138
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 1.0
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 35.5 bits (78), Expect = 1.0
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 331 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
F RRL T + K +A+ + A + Q H+RV VV P+F+V
Sbjct: 106 FCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLV 150
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 34.7 bits (76), Expect = 1.8
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L +G++ KQ L + F RRL + K +A+++ A ++ HIRV
Sbjct: 37 KLYNMGIVPTKQ-NLALCDNVSASSFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGP 95
Query: 436 QVVNIPSFIV 465
++V P+F+V
Sbjct: 96 ELVLDPAFLV 105
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.8
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +1
Query: 313 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 459
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.8
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 316 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 495
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 496 S 498
+
Sbjct: 135 A 135
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 34.7 bits (76), Expect = 1.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 113 IGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 229
I +YGLR++ E + + ++RK A L L+E DP R
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVR 70
Score = 32.7 bits (71), Expect = 7.3
Identities = 21/70 (30%), Positives = 33/70 (47%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
RL +GV+ K KL + + F ERRL + + + S A + H+R+
Sbjct: 80 RLYSVGVI--KNRKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGS 137
Query: 436 QVVNIPSFIV 465
+VV PS I+
Sbjct: 138 KVVYDPSTII 147
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 34.7 bits (76), Expect = 1.8
Identities = 21/62 (33%), Positives = 34/62 (54%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHS 513
+E+RL ++++G K+I AR R I V +V IPS I L+SG I + + S
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDIISYKNQLDS 257
Query: 514 VE 519
++
Sbjct: 258 LK 259
>UniRef50_Q6AJU9 Cluster: Related to two-component system response
regulator; n=1; Desulfotalea psychrophila|Rep: Related
to two-component system response regulator -
Desulfotalea psychrophila
Length = 531
Score = 34.3 bits (75), Expect = 2.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 450 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFF---- 283
D+H L D P + G Q F HL + + +++ K I+ LFF
Sbjct: 49 DIHILFYDLKFPSETDPITKL-GQLQHKFPHLTIVPLISAGMDILVKEILGLQLFFYIPK 107
Query: 282 -IQYSNTNQTSRRALPSNNL 226
+ YS + T RRAL +N++
Sbjct: 108 PLDYSEVSITVRRALETNSI 127
>UniRef50_A7RWV6 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 739
Score = 34.3 bits (75), Expect = 2.4
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 375 GEVHPSCQNFDPAKAYSCPQASCEHPIIYCAP 470
G VHPSC + D + CP +CE P + C P
Sbjct: 136 GNVHPSCSDADGTSSSCCPPLTCE-PDMMCNP 166
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 3.1
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +1
Query: 322 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 483
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_Q4P328 Cluster: Helicase SWR1; n=1; Ustilago maydis|Rep:
Helicase SWR1 - Ustilago maydis (Smut fungus)
Length = 1830
Score = 33.9 bits (74), Expect = 3.1
Identities = 19/58 (32%), Positives = 32/58 (55%)
Frame = +2
Query: 80 EKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALL 253
EK ++ L+ + ++ LR + WR+ + R RKAA E E+ D ++L NA+L
Sbjct: 615 EKKAEERRLRALAKWTLREVLKQWRLAVNVVRARKAAAEKAEKEKSDKEQL---NAIL 669
>UniRef50_Q382E4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3, putative; n=6; Trypanosomatidae|Rep: U3
small nucleolar ribonucleoprotein protein IMP3, putative
- Trypanosoma brucei
Length = 226
Score = 33.5 bits (73), Expect = 4.2
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
+L +G+++EK + L V + +E F +RRL T + +A + A + H+RV
Sbjct: 127 KLYAMGLINEK-LGLAEVDKVGVEVFCKRRLPTVLRDLNMAPNCKIAADFVHHGHVRVGT 185
Query: 436 QVVNIPSFIVRLD 474
+ P+F+V D
Sbjct: 186 SQIRDPAFLVPRD 198
>UniRef50_Q23YJ1 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 1263
Score = 33.1 bits (72), Expect = 5.5
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = -2
Query: 426 TNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLNLQTKHIIEFHLFFIQYSNTNQTSRR 247
TN+ + ++S ++ +SFE + Q TLQE + L T I + FF N S +
Sbjct: 1016 TNILMQQKSSDQLES--DSSFEFIEWQNTLQENIQLNTTERISYFCFFQNNKYLNPASEK 1073
Query: 246 ALPSNN 229
S+N
Sbjct: 1074 NHLSSN 1079
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 5.5
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 334 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_UPI00015555FA Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 740
Score = 32.7 bits (71), Expect = 7.3
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = -1
Query: 517 PPNEISERSQCACQSPGAQ*MMGCSQLACGHEYAFAGSKFW--HDGWTS-PGQL*TPASA 347
PP + +C + PG+ ++G A H +GS FW W S PGQ P+S
Sbjct: 597 PPGSLPRPHRCPFRPPGSGLVLGAGAAAPRHN-QISGSWFWSAQATWLSRPGQTPVPSSR 655
Query: 346 DDAP 335
+P
Sbjct: 656 SPSP 659
>UniRef50_A5P922 Cluster: Bacteriophage N4 receptor, inner membrane
subunit; n=1; Erythrobacter sp. SD-21|Rep: Bacteriophage
N4 receptor, inner membrane subunit - Erythrobacter sp.
SD-21
Length = 698
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +1
Query: 247 PSTRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARI 402
PS ++++ V+ +Q D+V G ++DF E + V + LAKS+ A +
Sbjct: 181 PSRDMIQLPVVSLEQRFTDFVAGTYMDDFAESHAKDLVVRQMLAKSVPSAGV 232
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 9.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 340 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_Q55FC8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 618
Score = 32.3 bits (70), Expect = 9.6
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Frame = +2
Query: 29 RVPSVFSKTYVTPRRPFEKARLDQ-ELKIIGEYGLRNKRE-VWR--VKYTLARIRKAARE 196
R PS K V + + L +L I E GL+NK E ++R + Y R+++ A +
Sbjct: 55 RDPSPTEKIIVLNNQKILLSNLKSFKLPIKIENGLKNKIEGMYRNMISYNSDRLQQMALD 114
Query: 197 LLTLEEKDPKRLFEGNALLLVWFVLEYW 280
+ LE K K L +LL WF EY+
Sbjct: 115 QVPLEIKKEKDLKRKMLMLLDWFKNEYF 142
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 32.3 bits (70), Expect = 9.6
Identities = 19/81 (23%), Positives = 40/81 (49%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
R+ ++G+++ Q L + + +RRL + + I A L+RQ H+R+
Sbjct: 81 RVYKLGIIETPQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGP 138
Query: 436 QVVNIPSFIVRLDSGKHIDFS 498
VV P+ +V + +I+++
Sbjct: 139 DVVTNPATLVSKEMEDYINWA 159
>UniRef50_A0B7K6 Cluster: Thiamine biosynthesis protein; n=1;
Methanosaeta thermophila PT|Rep: Thiamine biosynthesis
protein - Methanosaeta thermophila (strain DSM 6194 /
PT) (Methanothrixthermophila (strain DSM 6194 / PT))
Length = 335
Score = 32.3 bits (70), Expect = 9.6
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 5 ELAKMVNNRVPSVFSKTY-VTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIR 181
ELA+ + S+ S+ P++P +ARL++ L+I GE GLR+ + RIR
Sbjct: 275 ELARRIGTYDISIGSQQCRAAPKKPVTRARLEEILRIEGELGLRDLAMELADGVEIVRIR 334
Query: 182 K 184
+
Sbjct: 335 R 335
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,447,518
Number of Sequences: 1657284
Number of extensions: 12342964
Number of successful extensions: 33029
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 31981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33024
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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