Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20872
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz...   144   7e-36
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...   144   9e-36
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar...    36   0.006
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    29   0.54 
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha...    28   1.3  
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom...    27   2.9  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   8.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   8.8  

>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 192

 Score =  144 bits (350), Expect = 7e-36
 Identities = 67/84 (79%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           RLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV K
Sbjct: 79  RLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGK 138

Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
           Q+VN+PSF+VRLD+ KHIDF+L S
Sbjct: 139 QIVNVPSFVVRLDAQKHIDFALSS 162



 Score =  119 bits (286), Expect = 4e-28
 Identities = 54/73 (73%), Positives = 62/73 (84%)
 Frame = +2

Query: 35  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 214
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 215 KDPKRLFEGNALL 253
           KDPKRLFEGNA++
Sbjct: 65  KDPKRLFEGNAII 77



 Score = 31.5 bits (68), Expect = 0.10
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +3

Query: 510 FGGGRPGRVKRKNLRKDR 563
           +GGGRPGR KRK LR  +
Sbjct: 164 YGGGRPGRCKRKRLRSQQ 181


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score =  144 bits (349), Expect = 9e-36
 Identities = 67/84 (79%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           RLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV K
Sbjct: 79  RLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGK 138

Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
           Q+VN+PSF+VRLD+ KHIDF+L S
Sbjct: 139 QIVNVPSFVVRLDTQKHIDFALSS 162



 Score =  119 bits (286), Expect = 4e-28
 Identities = 54/73 (73%), Positives = 62/73 (84%)
 Frame = +2

Query: 35  PSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEE 214
           P   SKTY  PRRPFE ARLD ELK+ GEYGLRNK E+WRV  TL++IR+AARELLTL+E
Sbjct: 5   PRKQSKTYKVPRRPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDE 64

Query: 215 KDPKRLFEGNALL 253
           KDPKRLFEGNA++
Sbjct: 65  KDPKRLFEGNAII 77



 Score = 31.9 bits (69), Expect = 0.077
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +3

Query: 510 FGGGRPGRVKRKNLRKDRVAE 572
           +GGGRPGR KRK LR     E
Sbjct: 164 YGGGRPGRCKRKRLRSQEGGE 184


>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 183

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 19/70 (27%), Positives = 33/70 (47%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           +L  +G+L  K    D      +     RRL   + K  +++ +  A  LI Q H+RV  
Sbjct: 81  KLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGP 140

Query: 436 QVVNIPSFIV 465
            V+  P+++V
Sbjct: 141 HVITDPAYLV 150


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 18/44 (40%), Positives = 20/44 (45%)
 Frame = +3

Query: 321  D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 452
            D GLLGA+S   GVQS PG   P      P    + P  S   P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563


>SPBC36.06c |spo9||farnesyl pyrophosphate
           synthetase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 351

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 17/74 (22%), Positives = 35/74 (47%)
 Frame = +1

Query: 340 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHSVE 519
           R L       G+ ++I+ +++L     + +RK   N+P ++  LD+ + + F  +    E
Sbjct: 110 RGLDCWYLVVGVRRAINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQE 169

Query: 520 VVLDVSRGRTSART 561
            +L    G  S R+
Sbjct: 170 DLLSSRDGEASLRS 183


>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 292 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 423
           +++D  L + +E FL++   TQ+    +A  I    + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 337 ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSHSV 516
           +  L+  V         H +R + ++R  +VRK++ ++   I RLD  + ID  L   SV
Sbjct: 17  QENLERDVTNTASEYIAHESREIEKKRLQKVRKEISSVKEKIRRLD--ERIDSRLTKISV 74

Query: 517 E 519
           +
Sbjct: 75  K 75


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = +2

Query: 8   LAKMVNNRVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYT 166
           ++K VN      FS +    +R  + A +D   + + E   RN++   +++YT
Sbjct: 470 ISKKVNCLYVEAFSSSDAVLQRIQDNAVVDSPTEELSEQAARNRKSNVKIEYT 522


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = -1

Query: 379 SPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYEPDE 254
           +P  + TPA   DA  SPQS    H    +V  PV    PDE
Sbjct: 30  TPLAIHTPAKGFDADLSPQSLYDLH----TVTTPVTPLAPDE 67


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,580
Number of Sequences: 5004
Number of extensions: 48553
Number of successful extensions: 124
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)