Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20872
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192 126 2e-29
11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511 126 2e-29
03_01_0382 + 2961665-2961672,2962504-2962557,2962935-2963004,296... 126 2e-29
03_03_0147 + 14838707-14838734,14839316-14839430,14839464-148396... 78 6e-15
07_03_1358 - 25984897-25984997,25985623-25985650 47 1e-05
07_03_1357 - 25982861-25983068,25983354-25983361 44 1e-04
04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028 32 0.32
06_01_0324 - 2357432-2357724,2358042-2358105,2358321-2358404,235... 29 3.0
10_06_0085 + 10511258-10512327,10512978-10513058,10513318-105133... 29 3.9
03_06_0069 - 31449319-31450368 28 5.2
01_06_0939 - 33188620-33189252,33189570-33189680,33190460-331906... 28 5.2
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 27 9.1
08_02_0531 + 18256597-18256836,18257637-18257735,18258038-182581... 27 9.1
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 27 9.1
07_03_0696 - 20754773-20754821,20754930-20755028,20755107-207552... 27 9.1
05_02_0107 - 6667944-6668214,6668376-6668524,6668654-6668851,666... 27 9.1
02_05_1008 - 33461225-33462334 27 9.1
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 27 9.1
>11_06_0319 + 22330477-22330504,22331817-22332198,22333015-22333192
Length = 195
Score = 126 bits (303), Expect = 2e-29
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
R+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +
Sbjct: 81 RMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGR 140
Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
Q+VNIPSF+VR++S KHIDFSL S
Sbjct: 141 QIVNIPSFMVRVESEKHIDFSLTS 164
Score = 107 bits (257), Expect = 7e-24
Identities = 47/70 (67%), Positives = 59/70 (84%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 223
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 69
Query: 224 KRLFEGNALL 253
+R+FEG ALL
Sbjct: 70 RRIFEGEALL 79
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 510 FGGGRPGRVKRKNLRK 557
FGGG PGRVKRKN +K
Sbjct: 166 FGGGPPGRVKRKNQKK 181
>11_06_0317 + 22326599-22326695,22327058-22327439,22328334-22328511
Length = 218
Score = 126 bits (303), Expect = 2e-29
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
R+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +
Sbjct: 104 RMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGR 163
Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
Q+VNIPSF+VR++S KHIDFSL S
Sbjct: 164 QIVNIPSFMVRVESEKHIDFSLTS 187
Score = 106 bits (254), Expect = 2e-23
Identities = 47/68 (69%), Positives = 58/68 (85%)
Frame = +2
Query: 50 KTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKR 229
KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P+R
Sbjct: 35 KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNPRR 94
Query: 230 LFEGNALL 253
+FEG ALL
Sbjct: 95 IFEGEALL 102
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 510 FGGGRPGRVKRKNLRK 557
FGGG PGRVKRKN +K
Sbjct: 189 FGGGPPGRVKRKNQKK 204
>03_01_0382 +
2961665-2961672,2962504-2962557,2962935-2963004,
2963141-2963386,2967246-2967491,2968837-2968888,
2969270-2969651,2970527-2970681,2971389-2971713,
2975803-2975871,2976189-2976346,2976444-2976551,
2976659-2977131
Length = 781
Score = 126 bits (303), Expect = 2e-29
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +1
Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
R+ R G+L + Q KLDYVL L +E+FL RRLQT VFKAG+AKSIHHAR+LIRQRHIRV +
Sbjct: 297 RMNRYGLLADGQNKLDYVLALTVENFLARRLQTLVFKAGMAKSIHHARVLIRQRHIRVGR 356
Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
Q+VNIPSF+VR++S KHIDFSL S
Sbjct: 357 QIVNIPSFMVRVESEKHIDFSLTS 380
Score = 107 bits (257), Expect = 7e-24
Identities = 47/70 (67%), Positives = 59/70 (84%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 223
+ KT+ PRRP+EK RLD ELK++GEYGLR KRE+WRV+Y L+RIR AR LLTL+EK+P
Sbjct: 226 YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARHLLTLDEKNP 285
Query: 224 KRLFEGNALL 253
+R+FEG ALL
Sbjct: 286 RRIFEGEALL 295
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = +3
Query: 510 FGGGRPGRVKRKNLRK 557
FGGG PGRVKRKN +K
Sbjct: 382 FGGGPPGRVKRKNQKK 397
>03_03_0147 +
14838707-14838734,14839316-14839430,14839464-14839697,
14840571-14840667
Length = 157
Score = 77.8 bits (183), Expect = 6e-15
Identities = 39/70 (55%), Positives = 50/70 (71%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDP 223
+ KT+ PRRP+EK R D ELK+ GEYGLR+K E+WRV +ELLTL+EK+P
Sbjct: 10 YGKTFKKPRRPYEKERPDAELKLYGEYGLRSKCELWRV-----------QELLTLDEKNP 58
Query: 224 KRLFEGNALL 253
+R+FEG ALL
Sbjct: 59 RRIFEGEALL 68
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/53 (64%), Positives = 39/53 (73%)
Frame = +1
Query: 265 RIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 423
R G+L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 73 RYGLLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>07_03_1358 - 25984897-25984997,25985623-25985650
Length = 42
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/28 (64%), Positives = 23/28 (82%)
Frame = +2
Query: 44 FSKTYVTPRRPFEKARLDQELKIIGEYG 127
+ KT+ PRRP+EK RLD ELK++GEYG
Sbjct: 10 YGKTFKKPRRPYEKERLDAELKLVGEYG 37
>07_03_1357 - 25982861-25983068,25983354-25983361
Length = 71
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 424 RVRKQVVNIPSFIVRLDSGKHIDFSLKS 507
RV +Q+VNIPSFIVRL+S KHI FSL S
Sbjct: 3 RVGRQLVNIPSFIVRLESEKHIAFSLTS 30
>04_04_1470 - 33818394-33818625,33819636-33819743,33819895-33820028
Length = 157
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 340 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 465
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>06_01_0324 -
2357432-2357724,2358042-2358105,2358321-2358404,
2358638-2358715,2359298-2359360,2359459-2359561,
2359675-2359800,2360212-2360258,2361284-2361388,
2361483-2361605,2361759-2361854,2362052-2362141,
2362759-2362815,2362899-2363028,2363613-2363708,
2363815-2363875,2364391-2364490
Length = 571
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 339 ASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPIIYCA 467
A+S G SW CQ++DPAK Y+ Q H I+ A
Sbjct: 394 AASLVKGNLSWRSREFLDCQSYDPAKVYNFIQTGV-HGRIFAA 435
>10_06_0085 +
10511258-10512327,10512978-10513058,10513318-10513396,
10514160-10514201
Length = 423
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 322 IEDFLERRLQTQVFKAGLAKSIHHAR 399
+ED+ E L T F A L KS+H AR
Sbjct: 110 VEDYFEGSLHTLDFLAALDKSLHRAR 135
>03_06_0069 - 31449319-31450368
Length = 349
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 394 HDGWTSPGQL*TPASADDAPRSPQSSDQAHNRVSSVFHPVLQYE 263
HD +S G L P+SA +P + SDQ H VS+ P Y+
Sbjct: 237 HDVLSSLG-LKLPSSASSSPAASYYSDQLHAVVSNAGRPQAPYD 279
>01_06_0939 -
33188620-33189252,33189570-33189680,33190460-33190668,
33190781-33191078
Length = 416
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +2
Query: 98 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 220
Q L+ I G+ + +E++ + +L RIR R LT+E D
Sbjct: 212 QRLQTIHLLGIDDNQEIFTTQTSLTRIRAVPRYSLTIESLD 252
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 397 RILIRQRHIRVRKQVVN--IPSFIVRLDSGKHIDFSLKSHSVEV 522
R L+ + I +R +N IPS+I +D+ KH+D S + E+
Sbjct: 281 RELVSMKTIILRNCSINGSIPSYIGNMDNLKHLDLSFNKLTGEI 324
>08_02_0531 +
18256597-18256836,18257637-18257735,18258038-18258184,
18258295-18258427,18258521-18258585,18258792-18258962,
18259095-18259199,18259495-18259602,18259792-18260088,
18260191-18260256,18260477-18260679,18261178-18261232,
18261318-18261503,18261701-18261985
Length = 719
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Frame = +2
Query: 77 FEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAAR----ELLTLE 211
FE A+ ++ KII E R+ ++ +KY LA A ELL L+
Sbjct: 394 FEMAKQEESKKIISEEHQRSNEQITDLKYKLANCMNALESKNLELLNLQ 442
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/43 (37%), Positives = 18/43 (41%)
Frame = -3
Query: 155 RAILHACCGDRTLR*SSTLGQDVPFQKDDEVSRTSLKIPTVLC 27
R I+H C + T R LG D DE S S K LC
Sbjct: 265 REIIHCCADETTKRIIEELGDDYYAILADECSDLSYKEQLALC 307
>07_03_0696 -
20754773-20754821,20754930-20755028,20755107-20755226,
20755317-20755402,20756013-20756109,20756181-20756268,
20756358-20756454,20756797-20756892,20757029-20757125,
20757571-20757689,20758559-20758616,20758751-20758857
Length = 370
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 263 FVLEYWMKNR*NSIMCLV*RLRTSWSVVC 349
FV +W + + M LV RL TSW+VVC
Sbjct: 273 FVDAFWNSKKQSFTMHLV-RLMTSWAVVC 300
>05_02_0107 -
6667944-6668214,6668376-6668524,6668654-6668851,
6668989-6669250,6669378-6670327,6670907-6671022,
6671121-6671280
Length = 701
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -1
Query: 529 PGRPPPNEISERSQCACQSPGAQ*MMGCSQLACGHEYAFAGSKFWHDGW 383
P R PPNEI + QSP ++ + ++ E+A++G + + G+
Sbjct: 168 PPRLPPNEIYRNNSLLLQSPQSEWTLRQKKVKEAFEHAWSGYRNYAMGY 216
>02_05_1008 - 33461225-33462334
Length = 369
Score = 27.5 bits (58), Expect = 9.1
Identities = 20/69 (28%), Positives = 39/69 (56%)
Frame = +1
Query: 283 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 462
E Q+ L+Y+ G +E RR+ ++ F A +A+ + + +RHI V + + PS +
Sbjct: 163 ELQILLEYMDGGSLEG---RRIASEAFLADVARQVLSGIAYLHRRHI-VHRDIK--PSNL 216
Query: 463 VRLDSGKHI 489
+ +DSG+ +
Sbjct: 217 L-IDSGRRV 224
>01_05_0495 +
22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -2
Query: 339 LQEVLNLQTKHIIEFHLFFIQYSNTNQTSRRALPSNNLLG 220
+ +V +++H++ L F+ Y N+N TS + SN G
Sbjct: 562 ISDVAESRSRHLVPLFLTFMGYDNSNITSVDSYISNKCKG 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,266
Number of Sequences: 37544
Number of extensions: 350504
Number of successful extensions: 865
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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