Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20872
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)             153   8e-38
SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.25 
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.75 
SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)                       28   7.0  
SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)               28   7.0  
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 28   7.0  
SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)                 27   9.3  
SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)              27   9.3  

>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score =  153 bits (372), Expect = 8e-38
 Identities = 73/84 (86%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           RLVRIGVLDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRK
Sbjct: 77  RLVRIGVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRK 136

Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
           Q+VN+PSF+VRLDS KHIDFSL S
Sbjct: 137 QLVNVPSFVVRLDSQKHIDFSLNS 160



 Score =  134 bits (324), Expect = 5e-32
 Identities = 64/71 (90%), Positives = 67/71 (94%)
 Frame = +2

Query: 41  VFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKD 220
           V SKTY TPRRPFEK RL+QELKIIGEYGLRNKREVWRVK TLA+IRKAARELLTLEEKD
Sbjct: 5   VCSKTYTTPRRPFEKERLNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKD 64

Query: 221 PKRLFEGNALL 253
           P+RLFEGNALL
Sbjct: 65  PRRLFEGNALL 75



 Score = 35.5 bits (78), Expect = 0.035
 Identities = 13/16 (81%), Positives = 16/16 (100%)
 Frame = +3

Query: 510 FGGGRPGRVKRKNLRK 557
           +GGGRPGRVKRKN++K
Sbjct: 162 YGGGRPGRVKRKNMKK 177


>SB_25666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 68  RRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 226
           +RP  K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 57  KRPLGKELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 109


>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           +L  +G++  K+  L     +    F  RRL   +    +A+ +  A   I Q H+RV  
Sbjct: 81  KLHNMGLISTKK-NLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGP 139

Query: 436 QVVNIPSFIV 465
           +V+  P+F+V
Sbjct: 140 EVIMDPAFLV 149


>SB_30413| Best HMM Match : WSC (HMM E-Value=2.4)
          Length = 259

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 448 CSQLACGHEYAFAGSKFWHDGWTSP 374
           C++LA    Y++ G +FW + W+ P
Sbjct: 72  CARLAEQKNYSYFGVQFWGECWSGP 96


>SB_15605| Best HMM Match : p450 (HMM E-Value=1.4013e-45)
          Length = 454

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 83  KARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPK 226
           K  L Q+   +G+YG   KR+   V         AARE+L +E   PK
Sbjct: 2   KELLSQQFSDVGKYGRIYKRKFPTVNIVDIADPSAAREVLGIETLGPK 49


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 259 LVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARIL 405
           L++I   D+K M+ +Y+LGL +E   +R    +++   + K   H R L
Sbjct: 806 LLQILTQDDKNMEAEYLLGLILERQGKRLEAMKLYMDVIRKDTSHVRAL 854


>SB_45792| Best HMM Match : RVT_1 (HMM E-Value=3.5e-26)
          Length = 600

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -2

Query: 450 DVHNLLADTNMPLPDQNSGMMDGLRQASFEHLRLQTTLQEVLN 322
           D+  + A   MP P   +G+ D + Q +FE +++  T   VL+
Sbjct: 381 DLEKVKAICEMPQPVDIAGVQDLIAQEAFEKIKMMITKAPVLH 423


>SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)
          Length = 542

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 270 WSTG*KTDETRLCAWSED*GLLGASSADAGVQSWP 374
           WS G KT+ET +  W       G  +A+  +  WP
Sbjct: 298 WSNGFKTEETAITTWPN-----GFKTAETTITRWP 327


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,767
Number of Sequences: 59808
Number of extensions: 397229
Number of successful extensions: 1059
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)