Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20872
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   151   4e-37
U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.7  
U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily as...    29   3.5  
U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  151 bits (366), Expect = 4e-37
 Identities = 72/84 (85%), Positives = 80/84 (95%)
 Frame = +1

Query: 256 RLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRK 435
           RLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKSIHHARILI+Q HIRVR+
Sbjct: 79  RLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRR 138

Query: 436 QVVNIPSFIVRLDSGKHIDFSLKS 507
           QVV++PSFIVRLDS KHIDFSL+S
Sbjct: 139 QVVDVPSFIVRLDSQKHIDFSLQS 162



 Score =  127 bits (306), Expect = 7e-30
 Identities = 59/75 (78%), Positives = 68/75 (90%)
 Frame = +2

Query: 29  RVPSVFSKTYVTPRRPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL 208
           R+ +V SK   +PRRPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTL
Sbjct: 3   RLKTVQSKVTKSPRRPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTL 62

Query: 209 EEKDPKRLFEGNALL 253
           E+KDPKRLFEGNALL
Sbjct: 63  EDKDPKRLFEGNALL 77



 Score = 33.9 bits (74), Expect = 0.094
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 510 FGGGRPGRVKRKNLRK 557
           +GGGRPGRVKR+ LRK
Sbjct: 164 YGGGRPGRVKRRTLRK 179


>U97189-6|AAC48162.1|  183|Caenorhabditis elegans Hypothetical
           protein C48B6.2 protein.
          Length = 183

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 21/72 (29%), Positives = 37/72 (51%)
 Frame = +1

Query: 331 FLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSH 510
           F  RRL   +   G+ +S+  A  L+ Q H+R+  ++V  P+F+V   S   I ++  S 
Sbjct: 105 FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASK 164

Query: 511 SVEVVLDVSRGR 546
             + V+D +  R
Sbjct: 165 IKKHVMDYNNTR 176


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 285 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 455
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC006790-9|AAF60735.1|  382|Caenorhabditis elegans Hypothetical
           protein Y49F6B.9 protein.
          Length = 382

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 448 CSQLACGHEYAFAGSKFWHDG 386
           C +  CG E+ F   K WH+G
Sbjct: 152 CQRPGCGREFCFKCRKVWHEG 172


>U58749-10|AAK18879.1|  465|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 224 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 451 GCSQLACGHEYAFAGSKFWH 392
           GC +L   +EY FA  K WH
Sbjct: 339 GCDELIFANEYTFAEEKSWH 358


>U55364-6|AAA97973.1| 2541|Caenorhabditis elegans Hypothetical protein
            F21C10.7 protein.
          Length = 2541

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 23/93 (24%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
 Frame = +1

Query: 253  TRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAG-LAKSIHHARILIRQRHIRV 429
            ++LVR  V+ E QM  +  +  +I   L+R     + +A  L   +H  +  I  +  R+
Sbjct: 786  SKLVR--VVQEIQMWQEEAI--EIIRMLDRTQPASIQEANELIDRVHDLQQTIEHKSARI 841

Query: 430  R--KQVVNIPSFIVRLDSGKHIDFSLKSHSVEV 522
            +  K++  +P F+ +++  +H+   LK  +VE+
Sbjct: 842  QEVKKMSQVPEFVHKMEEVEHVQEQLKHLTVEL 874


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 63  VTYVFENTDGTLLFTILASSH 1
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 319 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 444
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 164 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 205


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/42 (23%), Positives = 28/42 (66%)
 Frame = +1

Query: 319 KIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 444
           ++EDFLE+ ++ ++ ++   ++I H+R LI+  +   ++ ++
Sbjct: 300 QMEDFLEKTVRPRMLQSVSVEAISHSRALIQFNYKEPQQSII 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,768,639
Number of Sequences: 27780
Number of extensions: 287521
Number of successful extensions: 782
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)