Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20871
         (822 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.96 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   1.3  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   1.3  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.1  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    22   5.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   6.8  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 285 LNKTSTLALVVNDNVTTISSLHEPS 359
           L KTS   + +N+N +T SS   PS
Sbjct: 151 LTKTSPTPVSINNNTSTSSSASSPS 175


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 613 VEFRLGRPYYVTRLRC*HQFDKNKQ 687
           + F L  PY  TRL     FD N Q
Sbjct: 327 IAFMLAHPYGTTRLMSSFAFDNNDQ 351


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 613 VEFRLGRPYYVTRLRC*HQFDKNKQ 687
           + F L  PY  TRL     FD N Q
Sbjct: 328 IAFMLAHPYGTTRLMSSFAFDNNDQ 352


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 613 VEFRLGRPYYVTRLRC*HQFDKNKQ 687
           + F L  PY  TRL     FD N Q
Sbjct: 328 IAFMLAHPYGTTRLMSSFAFDNNDQ 352


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 380 LGFNYYCGHCLRQLSNNGNSKQTK 451
           L  N   G C+R  S++ N K+T+
Sbjct: 761 LSVNQLTGQCVRNDSSDTNGKETR 784


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 380 LGFNYYCGHCLRQLSNNGNSKQTK 451
           L  N   G C+R  S++ N K+T+
Sbjct: 653 LSVNQLTGQCVRNDSSDTNGKETR 676


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/15 (53%), Positives = 14/15 (93%)
 Frame = +3

Query: 303 LALVVNDNVTTISSL 347
           +ALVVN+N TT++++
Sbjct: 200 VALVVNENNTTVNNI 214


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 127 CMKLTERIDKRKHRMPQLVISSLYLVK 47
           C KL E+  +R H   +L +++  + K
Sbjct: 309 CYKLMEKFPERSHEQQELYMAAQVIEK 335


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 339 KLWSHYRLQLKQVYLFYSTVFVSCLLM 259
           K  S+Y  Q  +++L   +VFV+  LM
Sbjct: 478 KCVSNYTKQQSKIHLIVRSVFVTTYLM 504


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,178
Number of Sequences: 336
Number of extensions: 3469
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22517873
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)