Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20871
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   1.8  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    28   1.8  
SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1 |...    26   5.6  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 258 PSGGTTRKPLNKTSTLALVVNDNVTTISSLHEPSKGST---TEGLXXXXXXXXXXXXXPI 428
           PSG  ++KP+++   L    N N++   +L E  + ST      +             P 
Sbjct: 314 PSGSPSKKPVSELEELHTAGNVNLSARRALFEKKESSTKNVENPVSHHLKSPVRTSFPPA 373

Query: 429 TETVNKQNMTSPTTTP 476
           + T +KQ+  SP+T P
Sbjct: 374 STTASKQD--SPSTVP 387


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -2

Query: 482 NARRCRGRGHILFVYCFRYWRAV 414
           N R   GRGH+ FV C    RAV
Sbjct: 8   NGRNKHGRGHVKFVRCINCSRAV 30


>SPCC1840.01c |mog1|SPCC790.04c|Ran GTPase binding protein Mog1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 400 TVIVETKPSVVEPFDGSCREEIVVTLSFTTKASVLVLF 287
           TVI+E    + +PFDGS       +++F   AS  V++
Sbjct: 42  TVIIELLEKIEKPFDGSVAAYHFNSIAFDNDASQRVIW 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,851,528
Number of Sequences: 5004
Number of extensions: 52005
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)