Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20871
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    33   0.33 
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    33   0.33 
Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/73 (28%), Positives = 25/73 (34%)
 Frame = +3

Query: 270 TTRKPLNKTSTLALVVNDNVTTISSLHEPSKGSTTEGLXXXXXXXXXXXXXPITETVNKQ 449
           TT KP   TST         T+ ++   P   +TT                P T      
Sbjct: 617 TTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVTLTTQTWTAPPTTTVKRTT 676

Query: 450 NMTSPTTTPSICR 488
             T PTTTP I R
Sbjct: 677 PQTVPTTTPKIPR 689


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/73 (28%), Positives = 25/73 (34%)
 Frame = +3

Query: 270 TTRKPLNKTSTLALVVNDNVTTISSLHEPSKGSTTEGLXXXXXXXXXXXXXPITETVNKQ 449
           TT KP   TST         T+ ++   P   +TT                P T      
Sbjct: 617 TTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKPVTLTTQTWTAPPTTTVKRTT 676

Query: 450 NMTSPTTTPSICR 488
             T PTTTP I R
Sbjct: 677 PQTVPTTTPKIPR 689


>Z82288-5|CAB05324.1|  380|Caenorhabditis elegans Hypothetical
           protein ZK896.7 protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
 Frame = +3

Query: 429 TETVNKQNMTS--PTTTPSICRQGFV---KNEKVYVNL 527
           T TV+    T+  PTTTP  C QGFV     +K Y+ L
Sbjct: 191 TTTVSTTTTTTVPPTTTPKACPQGFVLFEPTQKCYIVL 228


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 3   CLRTITH-R*YCLNSNLTKYNDEI 71
           C R + H R YC +SN+  YN+E+
Sbjct: 58  CKRFVNHYRHYCRSSNIATYNEEV 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,874,302
Number of Sequences: 27780
Number of extensions: 297765
Number of successful extensions: 670
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)