Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20870
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    30   0.41 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   1.7  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   2.9  
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    27   2.9  
SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease Pnu1|Schizosa...    26   6.7  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    26   6.7  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   6.7  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   8.8  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 299 HLEYHEGERREIDTNSPGALASRESSLGGDQDVRVA 406
           H++ HE  +  ++T +PG ++S  + L  DQ   V+
Sbjct: 199 HIQAHEMAQESLETRNPGNISSSSAPLASDQSPTVS 234


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 356 LASRESSLGGDQDVRVAGLPG 418
           LA++  + GGD+++RVA  PG
Sbjct: 41  LAAKNVNAGGDEEIRVANYPG 61


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 660 LCHSTQACFNSSGSWLVENISVISGSKDRSHLLSFLYEQIFAVA*FDSIPEQFSSK 493
           LC  T +C  +   WL ++I   +G     + LSF  E     A  DS+  + SSK
Sbjct: 580 LCVLTSSCLQNGDVWLTKDIR--TGLSQIFNRLSFFLENTNQTAPDDSVLVRCSSK 633


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 309 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALPDDKF 488
           +++E+ E+ ++   E + ++K   E  +     +   ++L+  F    QLG    P+DK 
Sbjct: 538 LSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQ 597

Query: 489 QAL--MRTVLEW 518
             L  +  V EW
Sbjct: 598 AVLDAVEDVAEW 609


>SPAC17C9.08 |pnu1|nuc1, end1|endodeoxyribonuclease
           Pnu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 522 DSIPEQFSSKLGIYR 478
           D+IPE F +KLG YR
Sbjct: 120 DNIPEMFQAKLGDYR 134


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 420 NPGSPATRTSWSPPRLLSLDA-RAPGEFVSISLRS 319
           NP  P +RTSW  P+     +  APG   S S  S
Sbjct: 765 NPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSS 799


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/45 (22%), Positives = 26/45 (57%)
 Frame = +3

Query: 276 ASLAEWEYTSNITKENEEKSIQTHLELSRQEKAAWEETKMYGWQD 410
           +SL+ W      +KE ++ ++ +++++SR    A     ++G+Q+
Sbjct: 187 SSLSSWMMILESSKEIKDSTLLSYMQISRYTLKACRRLVVFGFQN 231


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 696 SVKFFFAVAPAALCHSTQACFNSSGSWLVENISVISGSKDRSHLLSFLYEQ 544
           +V+ F A+ P ALC          G ++   I  +SG +D       L EQ
Sbjct: 25  TVQLFVALDPDALCACKLLSTLLKGDFISHKIRPVSGYRDLEQANKTLLEQ 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,465
Number of Sequences: 5004
Number of extensions: 51056
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)