Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20870
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0213 + 20974712-20975413 31 0.99
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 30 2.3
09_03_0218 + 13539481-13540082,13540171-13540276,13540645-135409... 29 3.0
08_01_0455 + 4012857-4013735 29 3.0
08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,535... 29 4.0
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 29 5.3
04_04_1286 + 32387687-32387908,32388046-32389494 29 5.3
10_08_0153 - 15240707-15241019,15241269-15241723 28 7.0
01_06_0507 - 29893563-29894470,29895227-29895419 28 7.0
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299... 28 9.2
>02_04_0213 + 20974712-20975413
Length = 233
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 309 ITKENEEKSIQTHLELSRQEKAAWEETKMYGWQDFQDFTLRRMFKKYSQLGVAALP 476
+ +E EE+ + E R +A EE W+DF D L ++ ++ Q A P
Sbjct: 73 VDEEEEEERMDQLWERDRDARAGDEERMDLLWEDFNDELLLQLRRRQQQRAAAGTP 128
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +2
Query: 584 EPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKNFTDYVNLYNEAAKLNGFD 742
EPE E+ ++ +E K A E A A KK+F + Y +A +L+ D
Sbjct: 390 EPEPMEVTEEEKERKERKAAAQEEKEAGNAAYKKDFETAIQHYTKAMELDDED 442
>09_03_0218 +
13539481-13540082,13540171-13540276,13540645-13540960,
13541187-13541263,13541269-13541895,13542783-13543112,
13543442-13543747,13543824-13543896,13544004-13544089,
13544219-13544396,13545311-13545756
Length = 1048
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 476 RR*IPSFDENCSG-MESNYATAKICSYKNESKCDLSLE 586
RR ++ CSG + NY + KIC NE C ++ E
Sbjct: 711 RRHTAQNEKECSGNADGNYTSPKICGDANELSCPINSE 748
>08_01_0455 + 4012857-4013735
Length = 292
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +2
Query: 614 SQDPEELKHAWVEWHNAAGATAKKNFTDYVNLYNEAAKLNGFDNVA 751
+ + EE++ A W A A A++ + Y NL + +N F + A
Sbjct: 247 AMESEEMRRAAARWKAQAEAAARRGGSSYENLQSMVEVINSFSSKA 292
>08_01_0609 + 5345761-5345862,5346808-5346871,5346958-5350191,
5350375-5350589,5351123-5351393,5351986-5352161,
5352287-5352394,5352821-5352930,5354291-5354393,
5354658-5354828,5354952-5355080,5355322-5355504,
5355612-5355701,5355823-5355934,5356100-5356227,
5357769-5357825,5357872-5357923,5358318-5358393,
5358860-5358950,5359046-5359224,5359563-5359681,
5359783-5359880
Length = 1955
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 494 FDENCSGMESNYATAKICSYKNESKCD-LSLEPEITEIFSTSQDPEELKHAWVEWHNAAG 670
F+E S +E A+ +YK + + D +SL P+I E + DP+EL+ E +
Sbjct: 833 FEEELSQVED---VARAIAYKKQHEVDVISLTPDIQESPQDNIDPQELRRMLQELADQNC 889
Query: 671 ATAKKNFTDYVNLYNEAAKLN 733
+ K F ++ EA K N
Sbjct: 890 SMGNKLF-----VFPEAVKAN 905
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 28.7 bits (61), Expect = 5.3
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Frame = +2
Query: 485 IPSFDENCSGMESNYATAKICSYKNESKCDLSLEP-EITEIFS-TSQDPEELKHAWVEWH 658
+P F CS +E A A + +Y+ ES SL+P + ++S P+E ++V +
Sbjct: 176 VPGFPAGCSNLEEK-AAAAMAAYEYESSSCSSLDPTSMPMVYSPIVLQPQECPLSFV-FD 233
Query: 659 NAAGA 673
NAA A
Sbjct: 234 NAAAA 238
>04_04_1286 + 32387687-32387908,32388046-32389494
Length = 556
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 444 KYSQLGVAALPDDKFQALMRTVLEWNRTTPLRRSARTR 557
KY Q+ LP + +R +EW +TT L+R R
Sbjct: 201 KYGQIAAEELPKGLYCLGVRLTMEWFKTTELQRKFTER 238
>10_08_0153 - 15240707-15241019,15241269-15241723
Length = 255
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -3
Query: 684 FFAVAPAALCHSTQACFNSSGSWLVENISVISGSKDRS 571
FFAV AALC T A ++G W V + G KD S
Sbjct: 6 FFAVLAAALC-ITSASAAAAGGW-VSGTATFYGGKDAS 41
>01_06_0507 - 29893563-29894470,29895227-29895419
Length = 366
Score = 28.3 bits (60), Expect = 7.0
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 649 GVAQRGRRDSKEELHRLREPLQRGRQ 726
G A GR D +E R R P++RGRQ
Sbjct: 306 GAADGGRPDWRERRVRWRRPVRRGRQ 331
>02_03_0161 +
15828887-15828985,15829066-15829686,15829759-15829908,
15829994-15830389,15830455-15830487,15830553-15830693,
15830793-15830924,15830999-15831082,15831159-15831461,
15831543-15831734,15831805-15831942,15832019-15832143,
15832223-15832319
Length = 836
Score = 27.9 bits (59), Expect = 9.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 557 NESKCDLSLEPEITEIFSTSQDPEELKHAWVEWHNAAGATAKKNFTDYV 703
+E K D +E ++ +PEE+K V + GATA+ N D++
Sbjct: 315 DEKKIDGFMEDNTVDVIHIVPEPEEIKGDNVS-EDCQGATAENNNGDFI 362
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,063,353
Number of Sequences: 37544
Number of extensions: 350275
Number of successful extensions: 1035
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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