Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20870
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   1.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   1.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   7.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.4  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 111 Y*LGAGQKLH*CFFFVGLNSRCSGVIRNIRQP 16
           Y LG G   H C + + ++S C G+++  + P
Sbjct: 35  YCLGCGDSCHKCKYGIAMSSAC-GIVQCAKGP 65


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 539 KICSYKNESKCDLSLEPEITEIFSTS-QDP 625
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 539 KICSYKNESKCDLSLEPEITEIFSTS-QDP 625
           KI  Y  E+     + P   EIFSTS +DP
Sbjct: 387 KILGYNLEAASKYQIVPSALEIFSTSMKDP 416


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 669 PAALCHSTQACFNSSGSWLVENISVI 592
           P+A C +T    N   SWL E+  V+
Sbjct: 229 PSAQCEATTMQENDKMSWLFESEDVL 254


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 660 LCHSTQACFNSSGSWLVENISVISGSKD 577
           L ++T +C+N   S   +NI V++ ++D
Sbjct: 320 LANNTLSCWNEHQSLDRQNIDVVARNED 347


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 634 EACLGGVAQRGRRDS 678
           +A LGG  Q GR+DS
Sbjct: 475 QAQLGGERQNGRKDS 489


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -3

Query: 645 QACFNSSGSWLVENISV 595
           Q CF   GSW  + I +
Sbjct: 157 QTCFMKFGSWTYDGIQI 173


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 668 GATAKKNFTDYVNL 709
           G +AKK+ T+Y NL
Sbjct: 214 GGSAKKSLTEYNNL 227


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,384
Number of Sequences: 438
Number of extensions: 3489
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)