Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20869
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    73   5e-14
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    63   5e-11
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   5.5  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    25   9.6  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 72.9 bits (171), Expect = 5e-14
 Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
 Frame = +1

Query: 496 GSEEVV-KGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIL-KFLS 669
           G+++ V KG H K  RK+R S  FRRPKT E  R PKY RKS+P  +R+D Y I+   ++
Sbjct: 8   GAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKIIVNPIN 67

Query: 670 V*SSNEED*R*QHLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
             S+ ++      L  +   K  +   +   KKLY ++  K+NTLIR
Sbjct: 68  SESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIR 114


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 38/107 (35%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
 Frame = +1

Query: 496 GSEEVV-KGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIL-KFLS 669
           G+++ V KG H K  +K+R S  FRRPKT +  R PKY RKS+    R+D Y I+   ++
Sbjct: 8   GAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKIIVNPIN 67

Query: 670 V*SSNEED*R*QHLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
             S+ ++      L  +   K  +   +   +KLY +   K+NTLIR
Sbjct: 68  SESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIR 114


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 379 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 468
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +2

Query: 563 SADPRRLNLLGTLNTQGSLCLREIAWMPTTSLNSSQSEAAMKKIEDNNTL 712
           S DP + N+L   N Q  L + E        L+S   E   K+++  +T+
Sbjct: 284 SGDPSQQNILQVKNVQAVLSIPEAESYKAQLLSSIAEEQKKKELQAKSTV 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,942
Number of Sequences: 5004
Number of extensions: 35011
Number of successful extensions: 106
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)