Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20869
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0407 - 24983491-24983575,24983655-24984015,24984367-249844...    76   3e-14
01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855     75   5e-14
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420...    33   0.36 
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936...    30   2.5  

>04_04_0407 -
           24983491-24983575,24983655-24984015,24984367-24984406,
           24984466-24984468
          Length = 162

 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 1/105 (0%)
 Frame = +1

Query: 499 SEEVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKF-LSV* 675
           ++ V  G   K  +KIR SV F RPKT +  R PKYPR S P RN++D Y ILK+ L+  
Sbjct: 31  AKAVKSGTAKKTTKKIRTSVTFHRPKTLKKSRDPKYPRVSTPGRNKLDQYQILKYPLTTE 90

Query: 676 SSNEED*R*QHLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
           S+ ++      L      K  +   +   KK+YDI   KVNTLIR
Sbjct: 91  SAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIR 135


>01_03_0217 + 13879259-13879270,13880322-13880683,13880771-13880855
          Length = 152

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
 Frame = +1

Query: 499 SEEVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKF-LSV* 675
           ++ V  G   ++ +KIR SV F RPKT +  R PKYPR S P RN++D Y ILK+ L+  
Sbjct: 21  AKAVKSGSIKRKSKKIRTSVTFHRPKTLKKARDPKYPRVSAPGRNKLDQYQILKYPLTTE 80

Query: 676 SSNEED*R*QHLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
           S+ ++      L      K  +   +   KK+YDI   KVNTLIR
Sbjct: 81  SAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIR 125


>07_01_0566 +
           4207894-4207974,4208090-4208144,4208671-4208759,
           4209742-4209794,4209966-4210120,4210201-4210528,
           4210618-4210730,4211394-4211538,4211951-4212259,
           4212340-4212420,4212989-4213349
          Length = 589

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +1

Query: 499 SEEVVKGEHGKRVRKIR-NSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYN 651
           S+  +KGE  K++R+   NS   +R KT +PP H K  +K   K    D+Y+
Sbjct: 136 SQNQLKGEKEKKLRRTEDNSAAEKRVKTQKPPTHDKQKKKR--KHYSSDSYS 185


>06_01_1133 +
           9364842-9364850,9364929-9365048,9365157-9365476,
           9366267-9366428,9367151-9367235,9367352-9367501,
           9367588-9367635,9367705-9367773,9367897-9368600,
           9369426-9369561,9369636-9369856,9370355-9370486,
           9371316-9371406,9371878-9371925,9372004-9372132,
           9372357-9372626
          Length = 897

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 20  GTCPESSCACPEISCACPETSCACPESSC 106
           GTC E  C CP++ C      C C +S C
Sbjct: 667 GTCCEKYCGCPKM-CKNRFRGCHCAKSQC 694


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,710,688
Number of Sequences: 37544
Number of extensions: 226100
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)