Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20869
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...    68   9e-12
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    62   6e-10
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    29   5.2  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical pr...    28   9.1  
AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical ...    28   9.1  

>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
 Frame = +1

Query: 502 EEVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKF-LSV*S 678
           ++VVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + I++  L+  S
Sbjct: 17  KKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQHPLTTES 76

Query: 679 SNEED*R*QHLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLI 807
           + ++      L    S+   +   +    KLY++   KVNTLI
Sbjct: 77  AMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLI 119


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 508 VVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKFLSV*SSNE 687
           VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ ++K      S+ 
Sbjct: 18  VVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVIKAPHTTESSM 77

Query: 688 ED*R*QH-LGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLI 807
           +     + L      K  +   +     LY++   KVNTLI
Sbjct: 78  KKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLI 118


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 38  SCACPEISCACPETSCACPES 100
           +C   E SC+C    C+CPES
Sbjct: 99  ACDDSECSCSCSGGECSCPES 119


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 38  SCACPEISCACPETSCACPES 100
           +C   E SC+C    C+CPES
Sbjct: 225 ACDDSECSCSCSGGECSCPES 245


>Z69793-8|CAA93674.2|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 531 LPMFTFYNFL*AL-SALVTGFTTFFCPLIPVFLGF 430
           LP FT+Y  L    + L TG  +F+C +IP    F
Sbjct: 82  LPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAF 116


>AL008867-3|CAC14271.1|  354|Caenorhabditis elegans Hypothetical
           protein R03A10.6 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -1

Query: 531 LPMFTFYNFL*AL-SALVTGFTTFFCPLIPVFLGF 430
           LP FT+Y  L    + L TG  +F+C +IP    F
Sbjct: 82  LPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAF 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,845,961
Number of Sequences: 27780
Number of extensions: 209736
Number of successful extensions: 739
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)