Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20869
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB) va...    68   6e-12
At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA) id...    65   6e-11
At1g32190.1 68414.m03959 expressed protein                             32   0.52 
At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) / polyc...    31   0.90 

>At3g55280.1 68416.m06139 60S ribosomal protein L23A (RPL23aB)
           various ribosomal L23a proteins
          Length = 154

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +1

Query: 529 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKF-LSV*SSNEED*R*Q 705
           K  +KIR  V F RPKT   PR PKYP+ S   RN++D Y ILK+ L+  S+ ++     
Sbjct: 33  KPAKKIRTKVTFHRPKTLTVPRKPKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNN 92

Query: 706 HLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
            L      +  +   +   KK+YDI   KVNTLIR
Sbjct: 93  TLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 127


>At2g39460.1 68415.m04843 60S ribosomal protein L23A (RPL23aA)
           identical to GB:AF034694
          Length = 154

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +1

Query: 529 KRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNILKF-LSV*SSNEED*R*Q 705
           K+ +KIR  V F RPKT   PR  KYP+ S   RN++D Y ILK+ L+  S+ ++     
Sbjct: 33  KKDKKIRTKVTFHRPKTLTKPRTGKYPKISATPRNKLDHYQILKYPLTTESAMKKIEDNN 92

Query: 706 HLGLYCSHKCKQAPYQGCSKKLYDINVAKVNTLIR 810
            L      +  +   +   KK+YDI   KVNTLIR
Sbjct: 93  TLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIR 127


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = +2

Query: 5   RHQNTGTCPES----SCACPEISCACPETSCACPESSC 106
           R ++TG C       SC+CP+  C  P  SC C    C
Sbjct: 289 RDESTGCCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDC 326



 Score = 31.5 bits (68), Expect = 0.68
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 23  TCPESSCACPEISCACPETSCACPESSC 106
           +CP+  C  P  SC C    C C + SC
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSC 333


>At2g23380.1 68415.m02792 curly leaf protein (CURLY LEAF) /
           polycomb-group protein identical to polycomb group
           [Arabidopsis thaliana] GI:1903019 (curly leaf); contains
           Pfam profile PF00856: SET domain
          Length = 902

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 20  GTCPESSCACPEISCACPETSCACPESSC 106
           GTC E  C CP+ SC      C C +S C
Sbjct: 671 GTCCEKYCGCPK-SCKNRFRGCHCAKSQC 698


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,201,028
Number of Sequences: 28952
Number of extensions: 190128
Number of successful extensions: 547
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)