Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20868
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc... 130 2e-31
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 2.6
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 3.4
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc... 27 4.5
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ... 27 4.5
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 7.8
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 26 7.8
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 7.8
>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 192
Score = 130 bits (314), Expect = 2e-31
Identities = 59/86 (68%), Positives = 74/86 (86%)
Frame = +3
Query: 252 RVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLF 431
+V+ STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G+ FRGLF
Sbjct: 68 QVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAGVAFRGLF 127
Query: 432 IIDDKQNLRQITINDLPVGRSVEETL 509
+ID K LRQITINDLPVGRSV+E L
Sbjct: 128 LIDPKGVLRQITINDLPVGRSVDEAL 153
Score = 100 bits (240), Expect = 2e-22
Identities = 45/62 (72%), Positives = 52/62 (83%)
Frame = +1
Query: 52 MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 231
M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A
Sbjct: 1 MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60
Query: 232 EF 237
+F
Sbjct: 61 KF 62
Score = 54.0 bits (124), Expect = 3e-08
Identities = 23/38 (60%), Positives = 29/38 (76%)
Frame = +2
Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 622
RL+ AFQF ++HGEVCPANW G+ TI DTK ++YF
Sbjct: 154 RLLDAFQFVEEHGEVCPANWHKGSDTI--DTKNPEKYF 189
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.5 bits (58), Expect = 2.6
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +2
Query: 314 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 478
+A R+ H H + + H R S G HS +LH QA+P A ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.4
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Frame = +1
Query: 10 SVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLSDYKGKYVVLF 165
S F+Y SF++ T +P+ TA+ FK + YK F
Sbjct: 36 SSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTTSYKD-----F 90
Query: 166 FYPLDFTFVCPTEIIAFSEKADEFRK 243
+ D+T PT + S+ DEF K
Sbjct: 91 VFSRDYTNWTPTFWVLLSQLIDEFLK 116
>SPAC12G12.10 |||WD repeat protein, human WDR21
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 420
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 447 QNLRQITINDLPVGRSVEETLGWCR 521
+NL++I + LPVG +++ +GW R
Sbjct: 92 KNLKKINLRQLPVGTELQK-IGWLR 115
>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1026
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 73 PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 204
P P F+ + +G+F S + K K V L YP TF TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 183 HVRVPDGDHRVLGEGGRVPQDRLRVLGASTDSHFTHLAWINTPR 314
HVR+ G VL + R+ R +G ST ++H+ + PR
Sbjct: 264 HVRINSGKLSVLSKNARLTHWVERRIGKSTSLVYSHVLSMLEPR 307
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 503 LLHRPPHGQVVDRDL-PEVLLVVDDEESSEGNARLLVQ 393
L + ++ D DL PEV ++ +EES G +R L++
Sbjct: 121 LAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 582 LAPGLQLAGHTSPCLSVNW 526
L P +L HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,959,293
Number of Sequences: 5004
Number of extensions: 56608
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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