Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20868
(852 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 90 2e-18
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 50 3e-06
06_01_0671 - 4899611-4899829,4900870-4901448 45 9e-05
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 40 0.003
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 39 0.006
09_02_0181 - 5425833-5426527,5426667-5429397 35 0.095
02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630... 32 0.50
01_03_0105 + 12604125-12604583 31 0.88
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 30 2.0
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014... 30 2.7
01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710 29 3.6
07_03_1139 + 24254662-24255306 29 4.7
06_03_0258 - 18847954-18848670 29 4.7
01_07_0178 + 41810795-41811409 29 4.7
01_01_0179 + 1517379-1517721,1518092-1518376,1519462-1519699,151... 29 4.7
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 29 6.2
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 29 6.2
04_03_0509 - 16653153-16653318,16653518-16653650,16653720-166538... 29 6.2
12_02_1154 - 26540090-26540653 28 8.2
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 28 8.2
08_01_0896 + 8830912-8830984,8831088-8832389,8832502-8832756,883... 28 8.2
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 28 8.2
07_03_0604 + 19903654-19904598 28 8.2
07_01_0478 - 3605306-3605614,3605766-3605906 28 8.2
06_03_0736 - 23989881-23990483,23991475-23991489 28 8.2
05_05_0158 + 22820764-22822032 28 8.2
02_03_0183 + 16106205-16106474 28 8.2
01_03_0162 + 13342996-13344216 28 8.2
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 90.2 bits (214), Expect = 2e-18
Identities = 41/76 (53%), Positives = 55/76 (72%)
Frame = +3
Query: 282 FTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQ 461
F+HLAW+ T RK GGLG + PLISD + IS+ +GVL + GI RGLFIID + ++
Sbjct: 212 FSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQH 271
Query: 462 ITINDLPVGRSVEETL 509
TIN+L +GRSV+ET+
Sbjct: 272 STINNLAIGRSVDETM 287
Score = 85.8 bits (203), Expect = 4e-17
Identities = 40/61 (65%), Positives = 47/61 (77%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 APQFKATAVVNGEFKDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGC 252
AP F A AV + EF ++ LSDY GK YV+LFFYPLDFTFVCPTEI AFS++ DEF K+
Sbjct: 74 APDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNT 133
Query: 253 E 255
E
Sbjct: 134 E 134
Score = 50.8 bits (116), Expect = 1e-06
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 RLVQAFQFT-DKHGEVCPANWRPGAKTIKPDTKAAQEYF 622
R +QA Q+ D EVCPA W+PG K++KPD K ++EYF
Sbjct: 288 RTLQALQYVQDNPDEVCPAGWKPGDKSMKPDPKGSKEYF 326
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 49.6 bits (113), Expect = 3e-06
Identities = 20/39 (51%), Positives = 29/39 (74%), Gaps = 1/39 (2%)
Frame = +2
Query: 509 RLVQAFQFTDKH-GEVCPANWRPGAKTIKPDTKAAQEYF 622
R +QA Q+ ++ EVCPA W+PG K++KPD K ++EYF
Sbjct: 114 RTLQALQYVQENPDEVCPAGWKPGEKSMKPDPKDSKEYF 152
Score = 46.0 bits (104), Expect = 4e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +3
Query: 387 GVLDEETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETL 509
GV + GI RGLFIID + ++ TIN+L +GRSV+ETL
Sbjct: 73 GVSIDSVGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETL 113
>06_01_0671 - 4899611-4899829,4900870-4901448
Length = 265
Score = 44.8 bits (101), Expect = 9e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +1
Query: 124 ISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIGCE 255
+SLS +KG+ VV++FYP D T C + AF + ++F+K G E
Sbjct: 137 VSLSKFKGRPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAE 180
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 249
I + D+ G YV+LF +P DFT VC TE+ A + A EF K G
Sbjct: 57 IRIHDFVGDTYVILFSHPGDFTPVCTTELAAMAGYAKEFDKRG 99
Score = 32.3 bits (70), Expect = 0.50
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKTIKP 595
R V A Q KH P NW+PG + + P
Sbjct: 193 RAVDALQTAAKHAVATPVNWKPGERVVIP 221
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 ISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRKIG 249
I L D+ G YV++F +P DFT VC TE+ + A EF K G
Sbjct: 22 IRLHDFVGDAYVIIFSHPADFTPVCTTELSEMAGYAGEFDKRG 64
>09_02_0181 - 5425833-5426527,5426667-5429397
Length = 1141
Score = 34.7 bits (76), Expect = 0.095
Identities = 14/26 (53%), Positives = 15/26 (57%)
Frame = +1
Query: 484 WGGRWRRPSAGAGLPVHGQARRGVPR 561
WGG P AG+G P HG RRG R
Sbjct: 1001 WGGGSGAPMAGSGFPTHGSGRRGERR 1026
>02_05_1121 +
34262019-34262040,34262144-34262211,34262909-34263067,
34263146-34263313,34264125-34264278,34264845-34264924,
34265567-34265839,34265956-34266099,34266750-34266884,
34266994-34267092,34267530-34267586,34267673-34267877,
34268159-34268277,34268779-34268877,34268964-34269203
Length = 673
Score = 32.3 bits (70), Expect = 0.50
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +2
Query: 398 RGDGHSLPRTLHHRRQAEPQADHDQRPAR--GEVGGGDPRLVQAFQFT 535
RG S P L RQ E A+H++ +VG GDP L +F+FT
Sbjct: 613 RGSFASEPEKLAEIRQIEQVAEHNRIALNIISQVGAGDPSLRVSFEFT 660
>01_03_0105 + 12604125-12604583
Length = 152
Score = 31.5 bits (68), Expect = 0.88
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +2
Query: 335 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRPA 481
H+H Q +P +LR GR DG H RRQ Q + +PA
Sbjct: 63 HQHKLFYSQPSPPRAKLRLVGRIDGRKEEAAHHSRRQPSLQKEAAAKPA 111
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 639 CLVASPKYSWAALVSGLMVLAPGLQ 565
CLV KY W A+ G MVL PGL+
Sbjct: 366 CLVT--KYRWKAIKGGTMVLGPGLR 388
>12_01_1057 -
10899871-10899961,10900255-10900411,10901420-10901498,
10901618-10901707,10903232-10903486,10903674-10903689,
10903907-10903940,10905653-10905884
Length = 317
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -1
Query: 639 CLVASPKYSWAALVSGLMVLAPGLQ 565
CLV KY W + G MVL PGLQ
Sbjct: 282 CLVT--KYRWKVIKGGKMVLCPGLQ 304
>01_01_0288 - 2373764-2373923,2374016-2374398,2375426-2375710
Length = 275
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 312 RKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQITI 470
+K+ G G N+P D R ++DY +DE+ +P F I D++ + + +
Sbjct: 65 KKKKGSGAGNLPGAIDAEIREAQDYLAIDEQEPVPENFPFEILDEEGMSVVIL 117
>07_03_1139 + 24254662-24255306
Length = 214
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 9/70 (12%)
Frame = +2
Query: 299 DQHAAQAGRTRPHEHSSDKRQVAPHLPRLR---------SAGRGDGHSLPRTLHHRRQAE 451
D A +T P H D PHLP L +AG P HHR ++
Sbjct: 140 DSSALCCPKTPPPAHRPDPATAVPHLPPLGRDPSPSPLPTAGENSTSPTPEREHHRGESP 199
Query: 452 PQADHDQRPA 481
A +RPA
Sbjct: 200 ADAFLARRPA 209
>06_03_0258 - 18847954-18848670
Length = 238
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/32 (43%), Positives = 15/32 (46%)
Frame = +1
Query: 502 RPSAGAGLPVHGQARRGVPRQLEARRQDHQAR 597
RPSA GLP H E RR+ HQ R
Sbjct: 17 RPSASDGLPTHQACTSKAAPDGETRRRQHQRR 48
>01_07_0178 + 41810795-41811409
Length = 204
Score = 29.1 bits (62), Expect = 4.7
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +2
Query: 317 AGRTRPHEHSSDKRQVAPHLPRL---RSAGRGDGHSLPRTLHHRRQAEPQADHDQR-PAR 484
A + E SSD +A PR R + ++ R L H + + D A
Sbjct: 54 ASASSESESSSDDALMARSTPRSVLPAEISRRELEAVLRRLGHGEPDDEELDAVAAIAAE 113
Query: 485 GEVGGGDPRLVQAFQFTDKHGE 550
E GGG+ L++AF+ D G+
Sbjct: 114 AEAGGGEDELMEAFKVFDADGD 135
>01_01_0179 +
1517379-1517721,1518092-1518376,1519462-1519699,
1519796-1519946,1520049-1520446,1520552-1520573
Length = 478
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +1
Query: 478 CPWGGRWRRPSAGAGLPVHGQARRG 552
C W GRWRR S G G +A G
Sbjct: 5 CGWCGRWRRSSGGRGGGADREANGG 29
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 28.7 bits (61), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 679 FEKGTSLKM*NVQELKKKTDYFLKQCKI 762
FEKGT K EL TD+F CK+
Sbjct: 308 FEKGTRPKRFRYDELSVATDFFSDDCKL 335
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 28.7 bits (61), Expect = 6.2
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +2
Query: 458 ADHDQRPARGEVGGGDPRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYFGDATR 637
A+H+++P G GGDP A+ E P A KP + G ++
Sbjct: 2 AEHEEQPYEGNGNGGDPAPASAY------AEYPAPEGSPPAAAAKPTGFSDGATDGGRSQ 55
Query: 638 HDTTP 652
H+T P
Sbjct: 56 HETQP 60
>04_03_0509 -
16653153-16653318,16653518-16653650,16653720-16653882,
16654488-16654595,16654986-16655100,16655581-16656083
Length = 395
Score = 28.7 bits (61), Expect = 6.2
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Frame = +2
Query: 386 RSAGRGDGHSLPRTLHHRRQAEPQADHDQRPARGEVGGGDPRLVQAFQ--FTDKHG-EVC 556
R+ G D + R H+RQ + +DH+ R + D R V Q F+D+ +
Sbjct: 300 RNHGTRDSYKDLRNGSHQRQYQKVSDHENRSIKDSESTVDQRSVSVTQDKFSDRSDPQSA 359
Query: 557 PANWRPGAKTIKPDTKAAQEYFGDATRH 640
++ P I + +E + D H
Sbjct: 360 YSDVDPATSMIDEASTGQREIYHDGAHH 387
>12_02_1154 - 26540090-26540653
Length = 187
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +2
Query: 335 HEHSSDKRQVAPHLPRLRSAGRGDGHS--LPRT--LHHRRQAEPQADHDQRPARGEVGGG 502
H H +R +A L +AG G + + R+ + RR+ E + +Q+P GEV GG
Sbjct: 15 HHHHHHRRALAASPAALAAAGNGLSATRRVRRSPAVEMRRERERRRAREQQPRCGEVAGG 74
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +2
Query: 404 DGHSLPRTLHHRRQAEPQADHDQRPARGEVGGGD 505
D H R HHRR+ + DH +R RG GGGD
Sbjct: 15 DRHHRSRDDHHRRRHDADDDH-RRHKRG--GGGD 45
>08_01_0896 +
8830912-8830984,8831088-8832389,8832502-8832756,
8832908-8833011
Length = 577
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +2
Query: 479 ARGEVGGGDPRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYFGDATRHDTT 649
A+ EVG D RL A + C A +PGA+ PDTK A + + TT
Sbjct: 470 AKSEVG--DARLQNALDYACGSCADCSAI-QPGAQCFDPDTKVAHATYAFNNFYQTT 523
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 490 GRWRRPSAGAGLPVHGQARRGVPRQLEARRQDHQ 591
G +R +G G+P+HG G +QL++R+Q Q
Sbjct: 1960 GMLQRQMSG-GVPIHGHGIGGQRQQLQSRQQQQQ 1992
>07_03_0604 + 19903654-19904598
Length = 314
Score = 28.3 bits (60), Expect = 8.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +1
Query: 487 GGRWRRPSAGAGLPVHGQARRGVPRQLEARR 579
GGR RRP G PVH +ARR R++ RR
Sbjct: 81 GGRRRRPRRVEGAPVH-RARRLHHRRVRRRR 110
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 395 GRGDGHSLPRTLHHR 439
G DGH LPRTL HR
Sbjct: 4 GGDDGHGLPRTLSHR 18
>06_03_0736 - 23989881-23990483,23991475-23991489
Length = 205
Score = 28.3 bits (60), Expect = 8.2
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +2
Query: 395 GRGDGHSLPRTLHHRRQAE-PQADHDQRPARGEV-GGGDPRLVQAFQFTDK 541
G G GH + + + E P A D + A E GGG R VQA + T+K
Sbjct: 88 GDGGGHDIAHEVEAKLAVETPPAAADAKEAEPEEEGGGGRRRVQAKKTTEK 138
>05_05_0158 + 22820764-22822032
Length = 422
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 481 PWGGRWRRPSAGAGLPVHGQARRGVPR 561
P+G WRRPS G + G+ RR PR
Sbjct: 67 PYGALWRRPS-GPAAGLEGEIRRYGPR 92
>02_03_0183 + 16106205-16106474
Length = 89
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 345 PLISDKSHRISRDYGVLDEETGIP 416
PL S HR SR +G L E +G P
Sbjct: 59 PLASSHEHRFSRLHGCLPESSGFP 82
>01_03_0162 + 13342996-13344216
Length = 406
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/59 (28%), Positives = 22/59 (37%)
Frame = +2
Query: 389 SAGRGDGHSLPRTLHHRRQAEPQADHDQRPARGEVGGGDPRLVQAFQFTDKHGEVCPAN 565
+ G SL HH A Q D P G GG +P Q+ + D + AN
Sbjct: 310 NVGDYSAQSLADEFHHLSDATNQLDQTHYPPFGGTGGAEPGDTQSHSWGDYYLAQSSAN 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,473,131
Number of Sequences: 37544
Number of extensions: 432086
Number of successful extensions: 1631
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1630
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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