Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20868
         (852 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin ...   142   3e-34
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...   118   4e-27
AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical...    38   0.009
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical p...    28   9.7  
Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical pr...    28   9.7  
Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein...    28   9.7  
Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein...    28   9.7  

>U37429-15|AAN63412.1|  195|Caenorhabditis elegans Peroxiredoxin
           protein 2 protein.
          Length = 195

 Score =  142 bits (344), Expect = 3e-34
 Identities = 66/85 (77%), Positives = 74/85 (87%)
 Frame = +3

Query: 255 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 434
           VL ASTDS F+HLAWIN PRK GGLG MNIP+++D +H+ISRDYGVL E+ GI FRGLFI
Sbjct: 70  VLAASTDSVFSHLAWINQPRKHGGLGEMNIPVLADTNHQISRDYGVLKEDEGIAFRGLFI 129

Query: 435 IDDKQNLRQITINDLPVGRSVEETL 509
           ID  QNLRQITINDLPVGRSV+ETL
Sbjct: 130 IDPSQNLRQITINDLPVGRSVDETL 154



 Score =  111 bits (266), Expect = 8e-25
 Identities = 49/59 (83%), Positives = 55/59 (93%)
 Frame = +1

Query: 70  KPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADEFRKI 246
           KPAPQFK  AVV+GEF D+SLSDYKGKYVVLFFYPLDFTFVCPTEIIAFS++A+EF+ I
Sbjct: 8   KPAPQFKTQAVVDGEFVDVSLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAEEFKAI 66



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 28/38 (73%), Positives = 31/38 (81%)
 Frame = +2

Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYF 622
           RLVQAFQF +KHGEVCPA W PG+ TIKP  K +QEYF
Sbjct: 155 RLVQAFQFVEKHGEVCPAGWTPGSDTIKPGVKESQEYF 192


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score =  118 bits (285), Expect = 4e-27
 Identities = 51/85 (60%), Positives = 68/85 (80%)
 Frame = +3

Query: 255 VLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFI 434
           V+  S DSHF+HLAW+NTPRK GGLG M+IPL++D + +I+  +GVLD+E+G+ +RGLF+
Sbjct: 99  VVACSCDSHFSHLAWVNTPRKDGGLGDMDIPLLADFNKKIADSFGVLDKESGLSYRGLFL 158

Query: 435 IDDKQNLRQITINDLPVGRSVEETL 509
           ID    +R  T NDLPVGRSV+ETL
Sbjct: 159 IDPSGTVRHTTCNDLPVGRSVDETL 183



 Score = 98.3 bits (234), Expect = 6e-21
 Identities = 43/67 (64%), Positives = 53/67 (79%)
 Frame = +1

Query: 55  PLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKADE 234
           PL      P FK TAVV+G+FK IS  DYKGK++V+FFYPLDFTFVCPTEIIA+ ++A+E
Sbjct: 32  PLGPKNTVPAFKGTAVVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEIIAYGDRANE 91

Query: 235 FRKIGCE 255
           FR +G E
Sbjct: 92  FRSLGAE 98



 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 22/43 (51%), Positives = 31/43 (72%)
 Frame = +2

Query: 509 RLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEYFGDATR 637
           R+++AFQF+DKHGEVCPA+W   + TIKP    ++EYF    +
Sbjct: 184 RVLKAFQFSDKHGEVCPADWHEDSPTIKPGVATSKEYFNKVNK 226


>AC024761-15|AAM97968.1|  231|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.11 protein.
          Length = 231

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 19/43 (44%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = +1

Query: 118 KDISLSDYKGK-YVVLFFYPLDFTFVCPTEIIAFSEKADEFRK 243
           K+ +L +Y G+ +++LF +P DFT VC TE+    + A EFRK
Sbjct: 18  KNQTLHNYIGEQWLMLFSHPADFTPVCTTELAELVKLAPEFRK 60


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 335 HEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEP 454
           HE  S K++ +  L R      G GHS+  T H R   +P
Sbjct: 625 HEMWSKKQKKSARLGRQAEGSSGSGHSIRATSHPRAPTQP 664


>Z92826-6|CAM06583.1|  111|Caenorhabditis elegans Hypothetical
           protein C18D11.9 protein.
          Length = 111

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +1

Query: 481 PWGGRWRRP-SAGAGLPVHGQARRG 552
           PWG  WRRP   G G+P  G    G
Sbjct: 75  PWGWGWRRPYYGGYGMPYGGYGEYG 99


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 694 SLKM*NVQELKKKTDYFLKQCKIKILT 774
           S+K+ N +EL +K DYF K  KIK ++
Sbjct: 71  SIKVVNPRELFRKNDYFKKLFKIKCIS 97


>Z81070-10|CAB03004.1|  163|Caenorhabditis elegans Hypothetical
           protein F26E4.12 protein.
          Length = 163

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 100 VVNGEFKDISLSDYKGKYVVL 162
           V N    D+SLSDYKGK +++
Sbjct: 9   VKNANGDDVSLSDYKGKVLII 29


>Z46935-4|CAA87051.1|  270|Caenorhabditis elegans Hypothetical
           protein M106.5 protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 285 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 464
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 465 TINDLPVGRS 494
           TIN++  G++
Sbjct: 226 TINEIYFGKT 235


>Z18854-1|CAA79306.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 285 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 464
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 465 TINDLPVGRS 494
           TIN++  G++
Sbjct: 226 TINEIYFGKT 235


>Z18806-1|CAA79270.1|  270|Caenorhabditis elegans capping protein
           beta subunit protein.
          Length = 270

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 285 THLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETGIPFRGLFIIDDKQNLRQI 464
           T + W+ T +   G+  MN+     + H +  D  + D+ T +   G  I D +  +R +
Sbjct: 171 TIMLWLQTNKSSSGV--MNLGGSLTRQHEM--DAPINDQNTHLANMGRMIEDQESKMR-L 225

Query: 465 TINDLPVGRS 494
           TIN++  G++
Sbjct: 226 TINEIYFGKT 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,075
Number of Sequences: 27780
Number of extensions: 343550
Number of successful extensions: 1107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)