Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20868
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.88 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    24   2.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   8.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -2

Query: 551  PRRACP*TGRPAPAEGLLHR 492
            P R CP   R   AEGL HR
Sbjct: 1697 PNRRCPPPPRMGSAEGLSHR 1716


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +2

Query: 380 RLRSAGRGDGHSLP-RTLHHRRQAEPQADHDQRP 478
           RL  +  GD    P + LHH +   PQA    +P
Sbjct: 797 RLSKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQP 830


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 408 PSPRPALRSRGRCGATCRLSEECSW 334
           P P P+   RGRC +  ++S    W
Sbjct: 45  PKPIPSYACRGRCSSYLQVSGSKIW 69


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 94   TAVVNGEFKDISLSDY 141
            T +++  FKD+ LSD+
Sbjct: 1401 TPIMDAHFKDVKLSDF 1416


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 520 LHQPRVSSTDLPTGRSLIVICLR 452
           +HQPR+   DL T + L +  L+
Sbjct: 140 IHQPRIIIIDLKTDKILRIYPLK 162


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/53 (22%), Positives = 22/53 (41%)
 Frame = +2

Query: 407 GHSLPRTLHHRRQAEPQADHDQRPARGEVGGGDPRLVQAFQFTDKHGEVCPAN 565
           G  LPR    +   +   +HDQ      +G G   +++   + D    +C A+
Sbjct: 427 GEPLPRVQWLKN--DEALNHDQPDKYDLIGNGTKLIIKNVDYADTGAYMCQAS 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,446
Number of Sequences: 438
Number of extensions: 3897
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)