Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20867
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    25   0.60 
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.4  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    23   1.8  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.4  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 354 YTPWCGHGHSEYN*GVWECFLTER 283
           Y PW  HGH E   G   C  +E+
Sbjct: 493 YRPWVQHGHQELVLGGEVCLWSEQ 516


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 50  QNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDP 160
           QN+  TKL  N N    G  E GK++   K    E P
Sbjct: 182 QNEKITKLKINYNPFAKGFRENGKSSAKRKQLVSEHP 218


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 517 LHREEVTLPFRLQAPYTSAIFGLVAFYFVTC 425
           +HR       RL       +FG++A+Y  TC
Sbjct: 287 MHRRFEITALRLFTIDNKLLFGVLAYYSTTC 317


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 272 YSSLRSVRKHSHTP*LYSLWP*PH 343
           YSS ++V +  H+P    + P PH
Sbjct: 58  YSSNKNVSRADHSPVFGKVEPVPH 81


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,056
Number of Sequences: 336
Number of extensions: 3532
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)