Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20867
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 29 0.65
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 29 0.86
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 29 0.86
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 27 2.0
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 27 2.0
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 2.6
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 27 2.6
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 27 2.6
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 27 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 4.6
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c... 26 6.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 25 8.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 25 8.0
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 25 8.0
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 29.1 bits (62), Expect = 0.65
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 62 NTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGS 172
N P NK +V+G +GK++L++ L G KGS
Sbjct: 635 NIVFPRNKLSIVIGPTGSGKSSLISALLGELSLNKGS 671
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 28.7 bits (61), Expect = 0.86
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +2
Query: 68 KLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVRDEYRDDHTRLSVWVL 247
+L +N ++G+ +G+TT + +QG P ++ Y ++ + + +L +
Sbjct: 26 ELARKQNWAIIGNTGSGRTTFLRCIQGSFTPSPSTSFSYPFLKGKSDSPWQAIQLLDFKS 85
Query: 248 DGVQVTLIYSS-LRSVRKHSH 307
G Q YS S R H
Sbjct: 86 SGQQRAAYYSERYHSFRDKEH 106
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 71 LPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDV 199
L + V +LG N GK+TL+ L G P++G ++ + V
Sbjct: 716 LSLSSRVAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPNLRV 758
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +2
Query: 80 NKNVLVLGDNETGKTTLVAKL 142
N NVLVLG++ +GK+TLV L
Sbjct: 95 NFNVLVLGESGSGKSTLVNTL 115
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 35 ILEEVQ-NQGNTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGS 172
IL+++Q N LPS ++V+G +GK++++ + G E KGS
Sbjct: 250 ILQDIQDNNSAVTLPS---IVVIGSQSSGKSSVLEAIVGHEFLPKGS 293
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +2
Query: 59 GNTKLPSNKNVLVLGDNETGKTTLV 133
G+ K P + +++LGD GKT+L+
Sbjct: 6 GSKKKPIYRKIVILGDGAAGKTSLL 30
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Frame = +2
Query: 47 VQNQGNTKLPSNK-NVLVLGDNETGKTTLVAKLQGVEDPKKGSALEYAYIDVRDEYRDDH 223
V+ +GN+ N VL+LG ++GKTT++ +++ + P + Y + E
Sbjct: 62 VRVKGNSTSGGNDIKVLLLGAGDSGKTTIMKQMRLLYSPGFSQVVRKQYRVMIFENIISS 121
Query: 224 TRLSVWVLDGVQVTLI--YSSLRSV--RKHSHTP 313
L + +D V+L+ R+V RKH+ P
Sbjct: 122 LCLLLEAMDNSNVSLLPENEKYRAVILRKHTSQP 155
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 29 SAILEEVQNQGNTKLPSNKNVLVLGDNETGKTTLVAKLQG 148
S L +++N N +P N+ LV+G +GK+TL L G
Sbjct: 591 STALFQLKNL-NFTIPRNQFTLVVGSTGSGKSTLAMALLG 629
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 365 SWSSIPHGVVMATVSITRVCGNVSSLSANLSR 270
SWSS+P V+ IT V N L+ N+ +
Sbjct: 73 SWSSVPQDVLFDAQIITSVSKNAEVLADNIKK 104
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -2
Query: 469 TSAIFGLVAFYFVTCVQVLNLICLY 395
++A+F ++ YFV CV ++LI L+
Sbjct: 675 STALFSIIMIYFVFCVFYISLIPLH 699
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 62 NTKLPSNKNVLVLGDNETGKTTLVAKLQGVEDPKKGSALEY 184
N L V ++G N GKTTL+ + P GS + +
Sbjct: 614 NFGLDLKSRVALVGPNGAGKTTLIKLILEKVQPSTGSVVRH 654
>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 559
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -1
Query: 476 SVYLCHFWTCCFLLCNLCSGVKFNLSIW-SPST-EAQLWSW 360
S Y+ F FLLCN+ S V +W P+T + WSW
Sbjct: 230 STYIACFAMLIFLLCNVGSHV-----VWDQPATVSGRSWSW 265
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 297 NIPTHPSYTHCGHDH 341
N+ H +YT GHDH
Sbjct: 70 NVENHENYTMVGHDH 84
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 168 PFFGSSTPCNFATRVVFPVSLSPSTKTFLF 79
P G S+P FA PVSL ST F F
Sbjct: 50 PTSGVSSPGIFANLAAKPVSLPASTTQFTF 79
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 56 QGNTKLPSNKNVLVLGDNETGKTTLVAKL 142
Q N + S +NV ++ + GKTTL K+
Sbjct: 20 QSNISINSIRNVGIIAHIDAGKTTLTEKM 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,243
Number of Sequences: 5004
Number of extensions: 57378
Number of successful extensions: 211
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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