Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20866
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 55 6e-08
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 53 2e-07
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 50 2e-06
11_01_0767 + 6438648-6438809,6439146-6440000 48 9e-06
11_02_0012 - 7346282-7347136,7347234-7347593 48 1e-05
11_02_0011 - 7337618-7338496,7338596-7338991 47 2e-05
11_02_0014 - 7352619-7352918,7353173-7353418 43 3e-04
01_01_1152 + 9170628-9171899 43 3e-04
11_01_0771 + 6453130-6454488 41 0.001
05_06_0044 - 25150322-25151260 41 0.001
04_04_0619 + 26652923-26653267,26653440-26654273 41 0.001
11_01_0750 - 6315126-6315896,6316371-6316784 38 0.010
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 3.4
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 5.9
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 7.8
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 55.2 bits (127), Expect = 6e-08
Identities = 27/56 (48%), Positives = 34/56 (60%)
Frame = +3
Query: 522 DSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKY 689
D++ AT AVL NA+YFKG W SKFD R TSD FY+ + P M G ++Y
Sbjct: 164 DAVDRATPAVLGNALYFKGDWESKFDARSTSDDVFYLPDGGHVSAPFM-SSGKWQY 218
Score = 35.9 bits (79), Expect = 0.039
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 GVELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEENTNN 498
G +++ AN V+V +L +A V D + ++ + + F K A + IN+W E T
Sbjct: 96 GPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAG 155
Query: 499 RIK 507
RIK
Sbjct: 156 RIK 158
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +3
Query: 510 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 665
++ P S+ T VL NA+YFKGAW+ KFD T D +F++ K+++ P M
Sbjct: 232 ILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFHLLDGKSVQAPFM 283
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/55 (40%), Positives = 34/55 (61%)
Frame = +3
Query: 510 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKR 674
+ P S++ T VL NA+YFKGAW+ KFD T D +F++ ++++ P M R
Sbjct: 484 IATPRSINHNTKLVLANALYFKGAWAEKFDVSKTEDGEFHLLDGESVQAPFMSTR 538
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 50.4 bits (115), Expect = 2e-06
Identities = 22/52 (42%), Positives = 31/52 (59%)
Frame = +3
Query: 510 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 665
++ P S+ T VL NA+YFKGAW+ KFD T D +F + K++ P M
Sbjct: 24 ILPPGSVDHTTRLVLGNALYFKGAWTEKFDASKTKDGEFRLLDGKSVLAPFM 75
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 48.0 bits (109), Expect = 9e-06
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Frame = +3
Query: 510 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYK-RGDYK 686
++ P+S S T V+ NAIYFKG W + FD+ T++R+F +++VP M + G Y
Sbjct: 77 VIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAEREFRRLDGSSVEVPFMQRPSGSYH 136
Query: 687 Y 689
+
Sbjct: 137 H 137
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 519 PD-SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 692
PD S+ TA VLVNAIYFKG WS+ F T+ F+ ++ P M R D G
Sbjct: 145 PDGSVHGGTALVLVNAIYFKGKWSNPFPRERTTTGKFHRLDGSSVDAPFMSSREDQYIG 203
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 47.2 bits (107), Expect = 2e-05
Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 519 PD-SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 692
PD S+ TA VLVNAIYFKG WS+ F T+ F+ ++ VP M R D G
Sbjct: 157 PDGSVHVDTALVLVNAIYFKGKWSNPFPRSSTTTGKFHRLDGSSVDVPFMSSREDQYIG 215
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 43.2 bits (97), Expect = 3e-04
Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +3
Query: 519 PD-SLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYKYG 692
PD S+ T VLVNAIYFKG WS F T+ F+ ++ V M R D G
Sbjct: 107 PDGSVHRLTTLVLVNAIYFKGKWSDPFPRESTTTGKFHRLDGSSVNVRFMRSREDQYIG 165
>01_01_1152 + 9170628-9171899
Length = 423
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +3
Query: 519 PDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 665
P+S+ S+T VL NA++FKG WS F T F++ ++ P M
Sbjct: 181 PNSVDSSTVVVLANAVHFKGTWSLPFHPSATFHAPFHLLDGGAVRAPFM 229
>11_01_0771 + 6453130-6454488
Length = 452
Score = 41.1 bits (92), Expect = 0.001
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +3
Query: 519 PDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFY 629
P S+ TA VL NAIYFKG W F+E T + FY
Sbjct: 195 PRSVGPETAVVLGNAIYFKGKWDRPFNESDTERKPFY 231
>05_06_0044 - 25150322-25151260
Length = 312
Score = 40.7 bits (91), Expect = 0.001
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 537 ATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 665
+ + L N++YF W F LT + DF+VS D ++VP M
Sbjct: 75 SASVFLANSLYFNAYWDHPFFPHLTEEGDFHVSPDHDVRVPFM 117
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 513 VNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 665
++P + S+T VL NA++FK W KF+ T R F+ + VP +
Sbjct: 139 ISPGTFGSSTKCVLANAMHFKATWGRKFESYDTQRRRFHRQDGTRVTVPFL 189
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 37.9 bits (84), Expect = 0.010
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 510 LVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMM 665
L+ ++ T VL +A+YF+G W + D R T+++ FY +++VP +
Sbjct: 161 LLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRRTTEQKFYCLDGTSVEVPFV 212
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 3.4
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 262 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 387
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 5.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 280 TEFASKSRDLRSIKGVELKMANKVYVHDG 366
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -3
Query: 320 LIDRRSRLLLANSVRIASSSGK 255
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,404,900
Number of Sequences: 37544
Number of extensions: 403132
Number of successful extensions: 993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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