Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20865
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   113   4e-26
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    30   0.44 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   3.1  
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   7.1  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   7.1  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    25   9.4  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    25   9.4  
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   9.4  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    25   9.4  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    25   9.4  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   9.4  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    25   9.4  
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   9.4  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   9.4  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  113 bits (271), Expect = 4e-26
 Identities = 53/84 (63%), Positives = 64/84 (76%)
 Frame = +3

Query: 3   FVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKI 182
           FVFT  DL EVR+ ++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI
Sbjct: 86  FVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKI 145

Query: 183 SKGTIEIINDVHILKPGDKVGASE 254
           ++GTIEI +DVH++    KVG SE
Sbjct: 146 TRGTIEITSDVHLVSKDAKVGPSE 169



 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 43/84 (51%), Positives = 58/84 (69%)
 Frame = +2

Query: 257 TLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYP 436
           TLLNMLNISPF+YG+ V  +YD G +F+PEILD+  EDL     +  + + A+SL   YP
Sbjct: 171 TLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYP 230

Query: 437 TIASAPHSIANGFKNLLAIAAVTE 508
           TI S  HS+ N +KNL+A++  TE
Sbjct: 231 TILSVMHSVVNAYKNLVAVSLATE 254



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 303 DEDMGFGLFD 312


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +1

Query: 67  LQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRL- 243
           LQ V +PL     S   +TPA +Q        F ++ K ++V   +S + T  S VT L 
Sbjct: 141 LQWVLMPLETSAYSLVTSTPAYIQN---GLDTF-TIAKLRQVYGSNSLVSTKKSIVTILL 196

Query: 244 -ELLNHPSQHVEHLSILIWSC 303
            E+L HP    + +S+LIW C
Sbjct: 197 NEVL-HPFYLFQAVSVLIWLC 216


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 205 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 80
           +IS  P + L+G+  AW  E  S  R  +    T+    +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +1

Query: 43  NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 204
           + +R++ R  L+    P  +S  PP TPA+ + +        ++P+  R++L++
Sbjct: 79  SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 112 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 210
           PPTT   +    +       +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 139 SGPRPVLWAGMTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRV 11
           +G  PV    +  + G++ P  AGAW L  N L    T   ++
Sbjct: 138 NGGVPVYVPIIPPEEGSVKPVSAGAWKLDMNKLRNAITEKTKM 180


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 88  LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 201
           L HC  + P    A  Q KPL S+ + SL KF+   LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -2

Query: 212 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 90
           IVD  NS   +  R  + L ++G L+  +GV GG +  ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/66 (24%), Positives = 29/66 (43%)
 Frame = +1

Query: 1   ASCSPAETSLRSVTNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 180
           A  +  E  + +     R++ +   +  P  + +    PTT    +R  LS++   SL K
Sbjct: 131 AKKAKTEAPVEAANKSLRSRKKTPEIAAPA-NIEPEVAPTTKTPKKRAALSNEEKQSLKK 189

Query: 181 FQRVLL 198
           FQ  +L
Sbjct: 190 FQSAML 195


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = +1

Query: 658 DDDMGFGLFD 687
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,019,527
Number of Sequences: 5004
Number of extensions: 61094
Number of successful extensions: 174
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)