Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20865
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 113 2e-25
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 113 2e-25
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 113 2e-25
03_02_0966 + 12783515-12783901 31 1.0
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 31 1.4
06_01_0080 + 644021-645463 30 2.4
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 29 3.2
02_01_0140 + 1014594-1016048 29 4.2
11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513 29 5.6
06_01_0486 - 3455030-3455770 29 5.6
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 5.6
01_06_1014 - 33810112-33811995 29 5.6
01_02_0084 + 10963076-10963570,10963888-10964845,10964846-109649... 29 5.6
11_06_0266 - 21791757-21792982,21793154-21793178 28 7.4
05_06_0043 + 25143513-25143866,25144010-25144191,25144284-251443... 28 7.4
11_06_0271 - 21804629-21805836,21805997-21806015 28 9.8
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 28 9.8
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 113 bits (271), Expect = 2e-25
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 185
+FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+
Sbjct: 92 IFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151
Query: 186 KGTIEIINDVHILKPGDKVGASE 254
KGT+EII V ++K GDKVG+SE
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSE 174
Score = 112 bits (270), Expect = 3e-25
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +2
Query: 254 TTLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGY 433
+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI Y
Sbjct: 175 SALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISY 234
Query: 434 PTIASAPHSIANGFKNLLAIAAVTE 508
PTIA+APH NG+KN+LA+A TE
Sbjct: 235 PTIAAAPHMFLNGYKNVLAVAVETE 259
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 113 bits (271), Expect = 2e-25
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 185
+FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+
Sbjct: 92 IFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151
Query: 186 KGTIEIINDVHILKPGDKVGASE 254
KGT+EII V ++K GDKVG+SE
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSE 174
Score = 112 bits (270), Expect = 3e-25
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +2
Query: 254 TTLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGY 433
+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ EDL KF +GV+ VA++SLAI Y
Sbjct: 175 SALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISY 234
Query: 434 PTIASAPHSIANGFKNLLAIAAVTE 508
PTIA+APH NG+KN+LA+A TE
Sbjct: 235 PTIAAAPHMFLNGYKNVLAVAVETE 259
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 113 bits (271), Expect = 2e-25
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKIS 185
+FT+GDL EVR+++ + KV APAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+
Sbjct: 92 IFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKIN 151
Query: 186 KGTIEIINDVHILKPGDKVGASE 254
KGT+EII V ++K GDKVG+SE
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSE 174
Score = 111 bits (267), Expect = 6e-25
Identities = 50/85 (58%), Positives = 66/85 (77%)
Frame = +2
Query: 254 TTLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGY 433
+ LL L I PFSYGLV+ VYDSG++F+PE+LD+ +DL KF +GV+ VA++SLAI Y
Sbjct: 175 SALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISY 234
Query: 434 PTIASAPHSIANGFKNLLAIAAVTE 508
PTIA+APH NG+KN+LA+A TE
Sbjct: 235 PTIAAAPHMFLNGYKNVLAVAVETE 259
Score = 28.3 bits (60), Expect = 7.4
Identities = 16/58 (27%), Positives = 20/58 (34%)
Frame = +1
Query: 514 FEEATTIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 687
+ A IKE++KDPSKF D D+G LFD
Sbjct: 262 YPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
>03_02_0966 + 12783515-12783901
Length = 128
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 389 AGVANVAALSLAIGYPTIASAPHSIANGFKN-LLAIAA 499
AG+A VAA++ A+ P +A A +++ KN LL+IA+
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFLLSIAS 104
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 362 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLAIAAV 502
PE RA F AG A V A +P A+A +S GF+ +A +V
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFRGGVATRSV 81
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 212 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 105
I+D N N R K++EERG L+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 28 LRSVTNCWRTKSRLQLVPVPLP 93
LR+V WR+ +RLQ +P PLP
Sbjct: 428 LRAVCRPWRSNARLQPLPPPLP 449
>02_01_0140 + 1014594-1016048
Length = 484
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Frame = -2
Query: 260 GWFRSSNLVTGLQDVY--IVDDFNSTL*NFGRDGKSLEERGFLWT-----EAGVVGGNDD 102
GWFRS +L +D Y ++D + + G + ++E L++ EA VVG DD
Sbjct: 336 GWFRSGDLAVRHEDGYVKVLDRSKDIIISGGENISTIEVEAALFSHPAVEEAAVVGRPDD 395
Query: 101 *QWG 90
WG
Sbjct: 396 -YWG 398
>11_06_0269 - 21800104-21800655,21800824-21801370,21801398-21801513
Length = 404
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 7 CSPAETSLRSVTNCWRTKSRLQLVPVPLP 93
C+ +RSV + WR + +Q P PLP
Sbjct: 82 CAAGRARVRSVCSSWRNAAAIQRPPRPLP 110
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 79 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 183
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +1
Query: 79 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SP 231
P P PH S PP P S + LSSKL P P+ S+T T+ P
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPETLEQPEPSTTTTTTTPP 100
>01_06_1014 - 33810112-33811995
Length = 627
Score = 28.7 bits (61), Expect = 5.6
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 58 KSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK--FQRVLLKSSTMYT 219
K R++L P+ +P + S PP PAS K L + + + +R +L++STM T
Sbjct: 104 KDRMKL-PLHVPVIKPSVPPLLPASSPAKLLPANVSEEWRRLEIERKILENSTMST 158
>01_02_0084 +
10963076-10963570,10963888-10964845,10964846-10964931,
10965187-10965211,10965544-10965644
Length = 554
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Frame = +2
Query: 212 CTHLEAR*QGWSF*TTLLNMLNISPFS--YGLVVKQVYDSGTI-FAPEILDIKP 364
C+H +GW+F +++N N+ P YG VV + +G + A +++D P
Sbjct: 380 CSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGRLREALDLIDTMP 433
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +1
Query: 28 LRSVTNCWRTKSRLQLVPVPLP 93
LRSV WR +RL P PLP
Sbjct: 41 LRSVCQAWRAAARLHRPPPPLP 62
>05_06_0043 +
25143513-25143866,25144010-25144191,25144284-25144374,
25144452-25144568,25144922-25144976,25145008-25145093,
25145190-25145300,25145564-25145608,25145695-25145740,
25146078-25146152,25146902-25146971,25147128-25147437,
25147778-25147851,25147996-25148151,25148416-25148539
Length = 631
Score = 28.3 bits (60), Expect = 7.4
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Frame = -1
Query: 570 CSELRWVLNELLDGGSFFKLNSVTAAMAKRFLKPLAMECGAE-AIVGYPIAKERAATLAT 394
C++ R + LL G +F + + T + + P+A G E A+VG+ K +A LA
Sbjct: 358 CADDRNLAVTLLKGADWFAILNYTIIV----VFPVA---GVEDAVVGFVTGKRKATELAH 410
Query: 393 PAWNLARRSSGLMSRISGAKIVPESYTCLTTRPYENGEMFNMLRRVVQK 247
WN + + SG + YT L G + + R +V+K
Sbjct: 411 AIWNESSVNGKCSLGFSGRCVKEYVYT-LAIHILSFGFLIRVWRSIVRK 458
>11_06_0271 - 21804629-21805836,21805997-21806015
Length = 408
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 7 CSPAETSLRSVTNCWRTKSRLQLVPVPLP 93
C+ +RSV WR + +Q P PLP
Sbjct: 32 CAADRARVRSVCRSWRAAAAIQRPPPPLP 60
>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 27.9 bits (59), Expect = 9.8
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +2
Query: 236 QGWSF*TTLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAAL 415
+G SF T L +L Y L K +Y+ I E + P+DL +KF + VA + +
Sbjct: 935 EGDSFLTDDLGLLE--SMEYELRTKHIYE--IIEEIEWTGVDPDDLTSKFYSDVAMLISS 990
Query: 416 SLAI 427
S++I
Sbjct: 991 SMSI 994
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,849,709
Number of Sequences: 37544
Number of extensions: 449614
Number of successful extensions: 1396
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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