Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20865
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical pr... 130 8e-31
U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical pr... 31 0.94
Z81070-12|CAB03008.1| 495|Caenorhabditis elegans Hypothetical p... 28 6.7
Z75544-6|CAA99882.1| 495|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF174643-1|AAD51977.1| 495|Caenorhabditis elegans PP2A-B regula... 28 6.7
AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical ... 28 6.7
AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical ... 28 8.8
>Z79754-9|CAB02098.1| 312|Caenorhabditis elegans Hypothetical
protein F25H2.10 protein.
Length = 312
Score = 130 bits (315), Expect = 8e-31
Identities = 60/84 (71%), Positives = 71/84 (84%)
Frame = +3
Query: 3 FVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKI 182
FVFT+ DL E+R KLLEN+ APA+ GAIAP V +P NTG+GPEKTSFFQAL IPTKI
Sbjct: 88 FVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKI 147
Query: 183 SKGTIEIINDVHILKPGDKVGASE 254
++GTIEI+NDVH++K GDKVGASE
Sbjct: 148 ARGTIEILNDVHLIKEGDKVGASE 171
Score = 120 bits (289), Expect = 1e-27
Identities = 51/85 (60%), Positives = 71/85 (83%)
Frame = +2
Query: 254 TTLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGY 433
+ LLNML ++PFSYGLVV+QVYD GT++ PE+LD+ E+LR +F +GV NVA++SLA+ Y
Sbjct: 172 SALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNY 231
Query: 434 PTIASAPHSIANGFKNLLAIAAVTE 508
PT+AS HS+ANG +N+L +AAVT+
Sbjct: 232 PTLASVAHSLANGLQNMLGVAAVTD 256
Score = 37.1 bits (82), Expect = 0.014
Identities = 24/60 (40%), Positives = 25/60 (41%)
Frame = +1
Query: 508 VEFEEATTIKEFIKDPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGFGLFD 687
V F+EA TIK FI DPSKF DDDMGFGLFD
Sbjct: 257 VSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312
>U41264-4|AAA82424.1| 220|Caenorhabditis elegans Hypothetical
protein F10E7.5 protein.
Length = 220
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 VFTRGDLVEVRDKLLENKVQAPARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKI 182
+FT EV + E + AR G +A +VV+P + + L +PTK+
Sbjct: 104 MFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKL 163
Query: 183 SKGTIEIINDVHILKPGD 236
KG I + + K G+
Sbjct: 164 DKGVITLYQQFEVCKEGE 181
>Z81070-12|CAB03008.1| 495|Caenorhabditis elegans Hypothetical
protein F26E4.1 protein.
Length = 495
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = -3
Query: 391 SLELGTEILWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVEKGGSEAPTLSPGFKMCT 212
SLE+ +I ++ + KN++ I N+KTI W+ + K G +A L ++ T
Sbjct: 128 SLEIDEKIN--QIRWLKKKNAANFILSTNDKTIKLWKISERERKIGDDAWNLPRTNRINT 185
Query: 211 S-----LMI-SIVPFEILV 173
S L I SIVP E++V
Sbjct: 186 SSFRGRLQIPSIVPMELIV 204
>Z75544-6|CAA99882.1| 495|Caenorhabditis elegans Hypothetical
protein F26E4.1 protein.
Length = 495
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = -3
Query: 391 SLELGTEILWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVEKGGSEAPTLSPGFKMCT 212
SLE+ +I ++ + KN++ I N+KTI W+ + K G +A L ++ T
Sbjct: 128 SLEIDEKIN--QIRWLKKKNAANFILSTNDKTIKLWKISERERKIGDDAWNLPRTNRINT 185
Query: 211 S-----LMI-SIVPFEILV 173
S L I SIVP E++V
Sbjct: 186 SSFRGRLQIPSIVPMELIV 204
>AF174643-1|AAD51977.1| 495|Caenorhabditis elegans PP2A-B
regulatory subunit PR55/B protein.
Length = 495
Score = 28.3 bits (60), Expect = 6.7
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Frame = -3
Query: 391 SLELGTEILWFDVQNFRCKNSSRIIYLLNNKTI*EWRDVQHVEKGGSEAPTLSPGFKMCT 212
SLE+ +I ++ + KN++ I N+KTI W+ + K G +A L ++ T
Sbjct: 128 SLEIDEKIN--QIRWLKKKNAANFILSTNDKTIKLWKISERERKIGDDAWNLPRTNRINT 185
Query: 211 S-----LMI-SIVPFEILV 173
S L I SIVP E++V
Sbjct: 186 SSFRGRLQIPSIVPMELIV 204
>AF000195-2|AAC24267.1| 316|Caenorhabditis elegans Hypothetical
protein C32F10.4 protein.
Length = 316
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 82 VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 222
VP P S PP + P+SS+ P +P K Q V +SST S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254
>AC024849-3|AAK68547.1| 327|Caenorhabditis elegans Hypothetical
protein Y67D8B.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 45 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 194
+L +Q A A+ L+ +P TGL P + FQAL P I+ T
Sbjct: 42 VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,825,028
Number of Sequences: 27780
Number of extensions: 352271
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -