Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20863
(736 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 35 0.010
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 27 2.8
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 3.7
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 3.7
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 27 3.7
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 27 3.7
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 27 3.7
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.8
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 26 6.4
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 25 8.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 8.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 25 8.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 8.5
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 35.1 bits (77), Expect = 0.010
Identities = 24/105 (22%), Positives = 55/105 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 238
K P +E P V L+ + +I +I +++ + ++ +V++ P + ++ +I+ +
Sbjct: 377 KAPTSEAPPKGHVKQLAKQLGNIYMPQSINNVEPTSHSSISKVVN-PSEKVISKIERACL 435
Query: 239 SDLENVKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLK 373
+ NV +KM K+ L P PR++ +T+H+I + ++ K
Sbjct: 436 AGNGNVHPSIKMEKNLEL-----NPHPRTLNATEHKINSRIQVSK 475
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 277 EIKRPLVDLRNPGPPQHQEHETQNPEHHEDA--EKIVSSVKNDINTAE 414
E +P D RN GP Q + + + PE H ++ E+ + + ++ N E
Sbjct: 148 EEPKPSGDFRNEGPKQCDDSKIEKPELHVNSKIEEPIHRIDSEHNEPE 195
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 273 IFIRHFTFSKSLFNDGLISSTITLTGMSMTSFL--FARRLLSMSLMVLAWSMCSCS 112
I + +F + S FN L +T +++ SFL F + L S +L++ CS
Sbjct: 176 IAVTYFASNMSFFNPHLAEATFADVLLTIISFLGVFLKNLRRFSCPILSYGAVFCS 231
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 3.7
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 319 PQHQEHETQNPEHHEDAEKIVSSVKNDIN 405
P +++ T++ E HED + V +++D N
Sbjct: 24 PNNKKSRTRSTESHEDRQAKVQKIQSDFN 52
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +3
Query: 582 TIAAPSVEETQNKASFETIESGLKSLETNFNSGLNQLSE 698
TI +PS++E+ ++ + +ETN NS L + SE
Sbjct: 168 TIVSPSLKESDFESEEKATNDNNGLIETNHNSKLEESSE 206
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 308 IPGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRK 415
+P P S+ HR LN K+ F P + T++K
Sbjct: 224 LPSPVSLSRYMHRSLNWKKLYDIGFAPFPLGSTEKK 259
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/53 (33%), Positives = 28/53 (52%)
Frame = +2
Query: 101 NLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVK 259
N S EH+++A I + N L + EV D K + + +L SDLEN++
Sbjct: 262 NKSRACEHVEKAAEI--LKNVLNERENEVTDKKGKGKQKAEESTLTSDLENLR 312
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Frame = +2
Query: 44 ASIPDKVPEAEDKPLNVVDNLSSEQEHIDQANTIKD----IDN----SLRANKKEVIDIP 199
A PD A + L++ DN+SS NTI + ID+ +L N +++ +
Sbjct: 431 ADTPDSYLAAPKERLSISDNMSSSSSQTATVNTISNYLNVIDSVREIALTVNDEKIYGLA 490
Query: 200 VKVIVEEIKPSLKS 241
+ +++++ S
Sbjct: 491 ISLLIQKFSRKFDS 504
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 25.8 bits (54), Expect = 6.4
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = +1
Query: 316 PPQHQEHETQNPEHHEDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQ 483
PP H ++ TQ HEDA+ S + + I R ++ G + EQ
Sbjct: 609 PPLHLKNTTQTNNAHEDAQSSNLSQNHSLFYERIPQRPSYRIEKQNKGIYEDENEQ 664
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/107 (23%), Positives = 43/107 (40%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLK 238
++ E E V+D E+E +K +N ++ E+ P + + K
Sbjct: 646 EIEELEPVVQKVLDEEKQERELKIAERDLKKGENIMKYGD-EIRSRPARTWFQSEKDKQA 704
Query: 239 SDLENVKCRMKMRKSRGL*SI*EIPGPRSIKSTKHRILNTTKMLKKS 379
S K + + K + E+P R+ K TK+ L+ K KKS
Sbjct: 705 SKASEAKDKKSLAKRKKQMEKEEVP--RAYKKTKNDRLSNKKSTKKS 749
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/51 (33%), Positives = 30/51 (58%)
Frame = +2
Query: 107 SSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVK 259
S+ +E +D+ KD+ +A K EV+D+ VK E+++ KS+ E+ K
Sbjct: 465 STYKELMDRVQN-KDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEHKK 514
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANK 178
K+P + + + LSS H +T D+DNS NK
Sbjct: 31 KIPNVKQEKSD--STLSSSSNHDSNHDTPADVDNSSNVNK 68
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 311 PGPRSIKSTKHRILNTTKMLKKSFLPSKMTLTQRKSLFVKASRKCQTV 454
P + + K I +K++ + LP+ +T Q K LFVK+ C+ V
Sbjct: 39 PAVNTASALKSVISEESKIIVSN-LPTDVTEAQVKELFVKSIGPCKRV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,921
Number of Sequences: 5004
Number of extensions: 52688
Number of successful extensions: 236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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