Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20863
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0558 - 4880811-4880996,4881098-4881178,4881247-4881393,488... 31 0.95
12_02_0772 - 23029703-23029715,23029835-23030463,23030637-230316... 31 1.3
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 30 2.2
01_01_0100 - 755894-756662,757086-757598,758718-761050 30 2.2
09_04_0086 + 14445665-14446683,14448669-14448915 29 2.9
09_04_0085 + 14441123-14443507,14443731-14443787 29 2.9
08_02_0003 + 11180421-11180757,11180773-11185715 29 2.9
08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651 29 2.9
07_01_0376 + 2815419-2815755,2815912-2817659 29 2.9
03_06_0204 + 32341756-32341843,32341943-32342025,32342690-323427... 29 2.9
11_06_0029 - 19405555-19405638,19405799-19405881,19405977-194061... 29 3.8
11_01_0651 - 5272442-5272718,5274026-5274081 29 3.8
08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313... 29 3.8
04_03_0398 - 15393102-15393378,15394685-15394740 29 3.8
10_08_0520 - 18495118-18498237 29 5.1
02_02_0233 + 8105765-8107840 28 6.7
06_01_0223 - 1709897-1709912,1710188-1712520 28 8.8
>05_01_0558 -
4880811-4880996,4881098-4881178,4881247-4881393,
4881985-4882029,4882370-4883134
Length = 407
Score = 31.1 bits (67), Expect = 0.95
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 286 RPLVDLRNPGPPQHQEHETQNPEHHEDAEK 375
RPL L +P PP Q ET+ E +++E+
Sbjct: 98 RPLPSLASPPPPTQQPQETEEQEQQQESEE 127
>12_02_0772 -
23029703-23029715,23029835-23030463,23030637-23031673,
23031830-23032166
Length = 671
Score = 30.7 bits (66), Expect = 1.3
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + E ID+ I ++D L +K+ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQKDTL 53
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>01_01_0100 - 755894-756662,757086-757598,758718-761050
Length = 1204
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D ++E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKKEDIDELEDIAEVDKQLERYQRDTL 53
>09_04_0086 + 14445665-14446683,14448669-14448915
Length = 421
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 351 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 394
>09_04_0085 + 14441123-14443507,14443731-14443787
Length = 813
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>08_01_0483 - 4243963-4244019,4244243-4245797,4246335-4246651
Length = 642
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>07_01_0376 + 2815419-2815755,2815912-2817659
Length = 694
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/44 (22%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + E ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNEDIDELEDIAEVDKQLERYQRDTL 53
>03_06_0204 +
32341756-32341843,32341943-32342025,32342690-32342765,
32342876-32342943,32343001-32343045,32343308-32343392,
32344270-32344385,32344497-32344580,32345394-32345540,
32345845-32345956,32346027-32346146,32346338-32346411
Length = 365
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +1
Query: 325 HQEHETQNPEHH---EDAEKIVSSVKNDINTAEIALRQGFQEVSDGIGKWYARTEQIN 489
H+ + Q + H EDAEK+V SVK + E G +V G ++ +N
Sbjct: 152 HEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLN 209
>11_06_0029 -
19405555-19405638,19405799-19405881,19405977-19406118,
19406190-19406348,19406649-19406726,19406854-19406982,
19407468-19407563,19408896-19408988,19409378-19409608,
19410177-19410350,19410983-19411126,19411229-19411765
Length = 649
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 68 EAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSL 235
E D+ L L QEH+ A+++ D+ LRA + + E+KP L
Sbjct: 95 ELSDRLLAARRELRERQEHLAAASSVADLAARLRAARASPDPLAAAAAAAELKPLL 150
>11_01_0651 - 5272442-5272718,5274026-5274081
Length = 110
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +2
Query: 380 FLPSKMTLTQRKSLFVKASRKCQTVLENGTLVP-----SKLTSSRPACTF--PRKFRRSD 538
+L TLT +S + + SR C L GT P S L S+PA PR+ RR D
Sbjct: 19 WLNMSSTLTASQSAWTRGSRNCHRPLVTGTARPLHGARSPLRRSKPAVQAGRPRRRRRLD 78
>08_01_0356 +
3131214-3132443,3132584-3132778,3132892-3132972,
3133324-3133383,3133466-3133560,3133660-3133816,
3133896-3134021,3134398-3134478,3134557-3134647,
3134735-3134868,3135068-3135136,3135219-3135308,
3135405-3135508,3135594-3135762,3136066-3136134
Length = 916
Score = 29.1 bits (62), Expect = 3.8
Identities = 18/68 (26%), Positives = 33/68 (48%)
Frame = +2
Query: 80 KPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVIDIPVKVIVEEIKPSLKSDLENVK 259
+P +V + S ++E N + L+ + P K IV++ SLK D + +K
Sbjct: 285 RPSDVSASASVKREPKADDNDNVPLSQRLKMGESSKSKPPAKNIVKKSPSSLKKDNKKMK 344
Query: 260 CRMKMRKS 283
+MK +K+
Sbjct: 345 MKMKTKKT 352
>04_03_0398 - 15393102-15393378,15394685-15394740
Length = 110
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Frame = +2
Query: 380 FLPSKMTLTQRKSLFVKASRKCQTVLENGTLVP-----SKLTSSRPACTF--PRKFRRSD 538
+L TLT +S + + SR C L GT P S L S+PA PR+ RR D
Sbjct: 19 WLNMSSTLTASQSAWTRGSRNCHRPLVTGTARPLHGARSPLRRSKPAVQAGRPRRRRRLD 78
>10_08_0520 - 18495118-18498237
Length = 1039
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 394 NDINTAEIALRQGFQEVSDGIGKWYARTEQINELQASLHISKKI 525
+D+N + + LR+G + + D + W A E NE A L + + +
Sbjct: 476 SDLNKSRV-LRKGLEHIPDSVRLWKAVVELANEEDARLLLHRAV 518
>02_02_0233 + 8105765-8107840
Length = 691
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 352 EHHEDAEKIVSSVKNDINTAEIALRQ--GFQEVSDGIGKWYARTEQ 483
EH KI+ ++ D+ + ++LR + +D G W R EQ
Sbjct: 426 EHRSSTAKIIGFIRKDLTSGWVSLRSVADHRRFNDRRGHWTLRREQ 471
>06_01_0223 - 1709897-1709912,1710188-1712520
Length = 782
Score = 27.9 bits (59), Expect = 8.8
Identities = 9/44 (20%), Positives = 23/44 (52%)
Frame = +2
Query: 59 KVPEAEDKPLNVVDNLSSEQEHIDQANTIKDIDNSLRANKKEVI 190
++ +DK L+ +D + + ID+ I ++D L +++ +
Sbjct: 10 RIASRDDKSLSCIDKQKGKNKDIDELEDIAEVDKQLERYQRDTL 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,570,957
Number of Sequences: 37544
Number of extensions: 340753
Number of successful extensions: 1250
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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