Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20862
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    29   0.88 
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   4.7  
SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein...    26   6.2  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   6.2  
SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein S18|Schizos...    26   6.2  
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   8.2  
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    25   8.2  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    25   8.2  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     25   8.2  
SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit S4|S...    25   8.2  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.2  

>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 496 KTGGQPLVKEEKKLIDSDPVVLPPRNSPSPESKPSP-GIDNNVTCQKVSVIQRT 654
           K   + + K  + L+++    + P N PS  S+PSP G   N +   +S +  T
Sbjct: 236 KPPSKVMPKSRRLLLEAKYPTVSPTNEPSAHSRPSPQGTTANSSSASISSLHNT 289


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
 Frame = +3

Query: 249 DPSVPILRSTMAPYRSFRKRIKKRNALMVTYLEKTKALMKI--------AQKKLDDLYHR 404
           +P   + R   +  +    +IK+ NA  +   E +K L K+          KKL D YHR
Sbjct: 283 NPQKQVCRLCKSQIKQICPKIKQPNAFQIFLKENSKRLRKLHPHITHKELMKKLSDEYHR 342

Query: 405 SLEA 416
           + +A
Sbjct: 343 TKDA 346


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 550 PVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNK 684
           P +   R+ P+PE+ P+    NN+   K + +  TP Q     NK
Sbjct: 626 PEIFHERHIPTPETGPNKPSKNNIL--KSTQVPVTPKQKSSTANK 668


>SPCC1259.01c |rps1802|rps18-2, SPCC825.06c|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 179 PEDFRHLRALINTALDPSVRV 117
           P++F+H+  L+NT +D  V+V
Sbjct: 6   PDNFQHILRLLNTNVDGKVKV 26


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
 Frame = +3

Query: 309 IKKRNALMVTYLEKTKAL--MKIAQKKLDDLYHRSLEAIFPTVIAH-TFLLKLKENSTY 476
           +K+ N   +T++   ++L  +K+A K L+ L H+S   +   +I H T  +  KE+S +
Sbjct: 438 LKECNVTSITFIWSCRSLSLLKVASKSLNSLLHQSNVRL--KIINHFTGSISCKESSEF 494


>SPBC16D10.11c |rps1801|rps18-1|40S ribosomal protein
           S18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 179 PEDFRHLRALINTALDPSVRV 117
           P++F+H+  L+NT +D  V+V
Sbjct: 6   PDNFQHILRLLNTNVDGKVKV 26


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 329  DGDVFGENKGTHENRTKETRR 391
            D D FGE+KG+ E +++  RR
Sbjct: 1034 DADAFGESKGSDELQSRILRR 1054


>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 374 CDFHECLCFLQIRHHQCIPFLYPFSKGAVRGHRRAEN 264
           C FH+C+   +  +   I F+ P  +  +  +R  EN
Sbjct: 259 CQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHEN 295


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 46  QREETLRAVVIRCLHVNF 99
           Q++ETLR  V RCLH  +
Sbjct: 163 QKKETLRNQVARCLHSTY 180


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 387  DDLYHRSLEAIFPTVIAHTFLLKLKENS 470
            D L+H  L+ + P  +   F++ LK+NS
Sbjct: 965  DPLFHTLLDQVDPFSLFQEFMVHLKDNS 992


>SPBC13G1.01c |nam9||mitochondrial ribosomal protein subunit
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 179 PEDFRHLRALINTALDPSVRVCHFVYLK 96
           P+ F  L A I   L+   R C FVY++
Sbjct: 211 PKPFMSLMAFIPAYLEVCFRTCSFVYVR 238


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = +3

Query: 249 DPSVPILRSTMAPYRSFRKRIKKRNALMVTYLEKTKALMKIAQKKLDDLYHRSLEAIFPT 428
           +P  P++      Y    K+I +   L   +      +     ++L  LY R +  ++P 
Sbjct: 266 NPKTPVMYMVDPAYEP-HKQIARYEKLQQIFQVVEATVSPEVGERLIGLYFRYIHRVYPV 324

Query: 429 VIAHTFLLKLKE 464
           +    FLL  K+
Sbjct: 325 IHGERFLLAFKK 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,601,212
Number of Sequences: 5004
Number of extensions: 46970
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)