Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20862
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 31 0.91
06_02_0006 + 10528423-10528768,10529132-10529201,10530820-105308... 31 1.2
12_02_0674 - 21745321-21746223,21746229-21747608 30 2.1
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 2.8
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 29 4.9
09_06_0137 - 21080263-21081894 29 4.9
11_06_0692 + 26327487-26328509 28 6.4
07_01_0793 - 6169661-6169936,6170942-6171025,6171473-6171590,617... 28 6.4
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/60 (21%), Positives = 27/60 (45%)
Frame = +1
Query: 229 SCSPARLTRLSRFSARRWPLTAPFEKG*RKGMH*W*RIWRKQRHS*KSHKRN*TIYIIDP 408
SC P+ + R + +A WP+ + + W +W + + + + R Y++DP
Sbjct: 338 SCGPSDIRRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVAYVVDP 397
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/59 (20%), Positives = 26/59 (44%)
Frame = +1
Query: 232 CSPARLTRLSRFSARRWPLTAPFEKG*RKGMH*W*RIWRKQRHS*KSHKRN*TIYIIDP 408
C P+ + R + +A WP+ + + W +W + + + + R Y++DP
Sbjct: 140 CGPSDIRRFAETTAASWPMPSDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVAYVVDP 198
>06_02_0006 +
10528423-10528768,10529132-10529201,10530820-10530892,
10530973-10531053,10532124-10532239,10532339-10532630
Length = 325
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Frame = +1
Query: 472 LTRFGRGDKTGGQ-----PLVKEEKKLIDSDPVVLPPRNSPSPESKPSP--GIDNNVTCQ 630
L +F RG+ GQ PL E K + D V P P+P PSP N+++
Sbjct: 228 LRKFKRGNTIAGQVQKNAPLYCEVKIVCDGKEVTTVPTADPTPPISPSPVNNKSNSISPT 287
Query: 631 KVSVIQRTPSQSQFRDNKKE 690
+S +++ D+KKE
Sbjct: 288 PLSPAPDHNNRAVADDDKKE 307
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = +1
Query: 511 PLVKEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTP--SQSQFRDNK 684
PL+ +++ P + PP++SP P P P + + + ++ T S + +
Sbjct: 427 PLISPKEETPSPSPYIEPPKSSPPPVKFPLPPVPLSSSTSEIPTTTGTSELSTASTGELP 486
Query: 685 KEDVTIPTT 711
V IPTT
Sbjct: 487 SPTVKIPTT 495
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 499 TGGQPLVKEEKKLIDSDPVVLPPRNSPSPESKPSPG 606
TG +PL K K+L + D +LPP + SPG
Sbjct: 127 TGRKPLPKSRKELPEFDSFMLPPPGKKGVKPVQSPG 162
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 484 GRGDK-TGGQPLV----KEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNVTC 627
G GD GG P + ++E+K P PP +P P S PSP ++ C
Sbjct: 27 GDGDFWAGGAPRLYDFSQQEQKPFLPAPAPAPPSPAPVPASPPSPAAESVAPC 79
>09_06_0137 - 21080263-21081894
Length = 543
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +1
Query: 529 KKLIDSDPVVLPPRN-SPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKEDVTIP 705
++L D+ P + PP P PE +P P + ++T + ++ + +P
Sbjct: 20 RRLCDAAPTLAPPPEPEPEPELEPEPALAPSLTTAETKLLDALHAALVDHRRAHPAAPVP 79
Query: 706 TTLP 717
T P
Sbjct: 80 ATAP 83
>11_06_0692 + 26327487-26328509
Length = 340
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 541 DSDPVVLPPRNSPSPESKPSP 603
D+ P PP+ SPSP PSP
Sbjct: 236 DTAPPPPPPKRSPSPSPSPSP 256
>07_01_0793 -
6169661-6169936,6170942-6171025,6171473-6171590,
6172917-6172987
Length = 182
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 10 MCR*PTRTNKHQQREETLRAVVIRCLHVNFK 102
MC RT +HQQR E R +V C+ +K
Sbjct: 1 MCDLVARTGRHQQRYEHGRRLVAGCIPFRYK 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,508,818
Number of Sequences: 37544
Number of extensions: 305378
Number of successful extensions: 1248
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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