Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20862
         (718 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical p...    30   1.4  
U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical pr...    30   1.4  
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical ...    29   3.3  
AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical ...    29   3.3  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U21323-11|AAA62556.1|  292|Caenorhabditis elegans Hypothetical
           protein C45G9.4 protein.
          Length = 292

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 562 PPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKEDVTIPTTLP 717
           PP   P    KP P   +    Q  SV   TP  S      ++ VT P TLP
Sbjct: 118 PPTPIPPTGVKPEPAPRSEPLYQPRSVSSTTPRTSATTGTTEQMVTAPATLP 169


>U21323-8|AAA62552.1|  294|Caenorhabditis elegans Hypothetical
           protein C45G9.9 protein.
          Length = 294

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = +1

Query: 562 PPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKEDVTIPTTLP 717
           PP   P    KP P   +    Q  SV   TP  S      ++ VT P TLP
Sbjct: 120 PPTPIPPTGVKPEPAPRSEPLYQPRSVSSTTPRTSATTGTTEQMVTAPATLP 171


>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical protein
            F13B9.1c protein.
          Length = 1609

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 544  SDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKED 693
            S P  LPP  S    SKP+P    N      S  Q T  Q Q   ++  D
Sbjct: 1416 SSPPTLPPVQSVPVSSKPAPPSAENQAQNSTSPQQPTQEQGQETQDRNPD 1465


>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical protein
            F13B9.1b protein.
          Length = 1614

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 544  SDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKED 693
            S P  LPP  S    SKP+P    N      S  Q T  Q Q   ++  D
Sbjct: 1416 SSPPTLPPVQSVPVSSKPAPPSAENQAQNSTSPQQPTQEQGQETQDRNPD 1465


>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
            F13B9.1a protein.
          Length = 1632

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/50 (34%), Positives = 20/50 (40%)
 Frame = +1

Query: 544  SDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRTPSQSQFRDNKKED 693
            S P  LPP  S    SKP+P    N      S  Q T  Q Q   ++  D
Sbjct: 1438 SSPPTLPPVQSVPVSSKPAPPSAENQAQNSTSPQQPTQEQGQETQDRNPD 1487


>AC024755-7|AAO91688.1|  833|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4b protein.
          Length = 833

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +1

Query: 475 TRFGRGDKTGGQPLVKEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRT 654
           T FG  +  GG P  +    L D D  +     +   ES   PG     +  K   I+RT
Sbjct: 231 TNFGSSNMRGGDPFERFRSMLKDKDEKI----EAIEGESSSDPGTPG--SSSKSKTIERT 284

Query: 655 PSQSQFRDNKKE 690
              SQ    KKE
Sbjct: 285 SEVSQKVSEKKE 296


>AC024755-6|AAF59639.1|  877|Caenorhabditis elegans Hypothetical
           protein Y34B4A.4a protein.
          Length = 877

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/72 (30%), Positives = 28/72 (38%)
 Frame = +1

Query: 475 TRFGRGDKTGGQPLVKEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVIQRT 654
           T FG  +  GG P  +    L D D  +     +   ES   PG     +  K   I+RT
Sbjct: 231 TNFGSSNMRGGDPFERFRSMLKDKDEKI----EAIEGESSSDPGTPG--SSSKSKTIERT 284

Query: 655 PSQSQFRDNKKE 690
              SQ    KKE
Sbjct: 285 SEVSQKVSEKKE 296


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 520 KEEKKLIDSDPVVLPPRNSPSPESKPSPGIDNNVTCQKVSVI 645
           KE+KK +DS PV    ++ P+P    +  +  N+    V V+
Sbjct: 450 KEDKKEVDSKPVATNIQDVPTPIPSETSKVPENLISSAVKVV 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,718,499
Number of Sequences: 27780
Number of extensions: 282655
Number of successful extensions: 1108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)