Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20862
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.54 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.9  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   5.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.8  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 538 IDSDPVVLPPRNSP-SPESKPSP 603
           ++ DP++ PP ++P SP   P P
Sbjct: 429 VERDPILTPPSSNPVSPVPSPDP 451


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 53  RKHYVQWL*DAYM*ILNRQSDRHEH*DRVQCLLAPEDAENLLD 181
           R + V+ + DAYM +       ++H DRV C +A +  E + D
Sbjct: 464 RVYKVETIGDAYMVVSGAPVKENDHADRV-CDMALDMVEAITD 505


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 399 DINRLVSFVRFS*VPLFSP 343
           D+N++VS    + +P+FSP
Sbjct: 147 DLNKVVSVFYTAVIPMFSP 165


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 527 SSFTKGCPPVLSPLPKRVSTVF 462
           +S+T GC   L    K   TVF
Sbjct: 176 NSYTNGCVEALKDTVKLAGTVF 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,718
Number of Sequences: 438
Number of extensions: 3226
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)