Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20860
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   111   7e-26
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    31   0.16 
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos...    28   1.1  
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.9  
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch...    27   1.9  
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar...    27   1.9  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    27   1.9  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   4.4  
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N...    26   4.4  
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.7  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  111 bits (268), Expect = 7e-26
 Identities = 52/94 (55%), Positives = 69/94 (73%)
 Frame = +3

Query: 228 GKKHYDAQSXKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARPGA 407
           GK     ++ +  +++ P LE+LLP ++GNVGFVFT  DL EVR+ ++ N + APARP A
Sbjct: 54  GKNTMIRRAMRGIINDMPELERLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNA 113

Query: 408 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
           IAPL V +PA NTG+ P KTSFFQAL IPTKI++
Sbjct: 114 IAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITR 147



 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = +2

Query: 491 PYQNFKGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFA 661
           P +  +GTIEI +DVH++    KVG SEA LLNMLNISPF+YG+ V  +YD G +F+
Sbjct: 142 PTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFS 198



 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 26/57 (45%), Positives = 39/57 (68%)
 Frame = +1

Query: 91  KSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMRKAXK 261
           K+ YF K+  L ++Y   F+V  DNV SQQM  +R  LR ++ ++MGKNTM+R+A +
Sbjct: 8   KAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMR 64


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 23/60 (38%), Positives = 29/60 (48%)
 Frame = +3

Query: 258 KDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARPGAIAPLSVVIPA 437
           ++H +N   L KLL    G VG +FT     EV            AR GA+AP + VIPA
Sbjct: 83  EEHAENVSKLTKLL---HGAVGLLFTNSKPDEVIGYFESFVQNDFARAGAVAPFTHVIPA 139


>SPCC1442.07c |||ubiquitin/metalloprotease fusion
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 282

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 189 LLHLLRAHVIGTHDETFWVLVQELD---DLNEVVRLPSSLV 76
           L+H L  +V G HD +FW L ++L    D  +++  P S V
Sbjct: 200 LIHELTHNVHGEHDSSFWELFRQLTKEADAADLLGKPGSYV 240


>SPBC1348.02 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 189 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 64
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPBPB2B2.19c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 189 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 64
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPAC977.01 |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1||Partial|Manual
          Length = 316

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 189 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 64
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 256 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 297


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 189 LLHLLRAHVIGTHDETFWVLVQELDDLNEVVRLPSSLVLPTH 64
           +LH L   + G  D    V++ +L    E +  P  ++ PTH
Sbjct: 284 MLHYLSNIIFGNFDYRLSVIIGDLFTFMEKIAFPCYIMFPTH 325


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +2

Query: 494 YQNFKGTIEII-NDVHILKPGDKVGASEANLLNM-LNISPFSYGLVVKQVYDSGTIFALK 667
           + N++G I  I N + I +  D V    ++L +   NIS  S  LVV QV+ +     L 
Sbjct: 339 FVNYRGEITTIKNAISIHEEDDGVLFKYSDLRDRNANISARSIKLVVSQVFTAANYEYLV 398

Query: 668 FW 673
           +W
Sbjct: 399 YW 400


>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
           Nic1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -2

Query: 642 SYTCLTTRPYENGEMFNMLRRLASEAPTLSPGFKMCTSLMISIVPLK--FW*GWKELGRK 469
           SY+   T PY +   ++++    S     + G      L+IS+ P++  FW G   L   
Sbjct: 268 SYSSGETNPYFSRLYYSIILTFVSVIAAFTIGIIQMLMLIISVHPMESTFWNGLNRLS-D 326

Query: 468 RFSLDRGRCCG 436
            + +  G  CG
Sbjct: 327 NYEIVGGCICG 337


>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 602

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 409 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRYY 516
           L HC  + P    A  Q KPL S+ + SL KF+ ++
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFH 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,996,886
Number of Sequences: 5004
Number of extensions: 61037
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)