Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20860
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 100 1e-21
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 99 2e-21
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 99 2e-21
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 33 0.28
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 32 0.37
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 32 0.49
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 31 0.64
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 30 1.5
01_01_0703 - 5425713-5425862,5426302-5426451,5426853-5426964,542... 30 1.5
11_06_0266 - 21791757-21792982,21793154-21793178 29 2.6
03_02_0600 - 9748382-9748933,9749805-9749840,9751164-9751218,975... 29 2.6
11_01_0355 + 2679561-2680985,2681183-2682295 29 4.5
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 29 4.5
06_01_0486 - 3455030-3455770 29 4.5
06_03_1442 - 30172595-30172606,30172607-30172684,30173034-301734... 28 6.0
06_03_1439 - 30157110-30157121,30157122-30157199,30157549-301579... 28 6.0
06_03_1427 - 30090464-30090475,30090476-30090553,30090903-300913... 28 6.0
06_03_1422 + 30058936-30058975,30059057-30059233,30060848-300610... 28 6.0
12_02_0142 - 14306325-14306490,14306584-14306687,14306788-143069... 28 7.9
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 28 7.9
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 100 bits (239), Expect = 1e-21
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Frame = +3
Query: 228 GKKHYDAQSXKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARP 401
GK + K H DN N +L+P + GNVG +FT+GDL EVR+++ KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 402 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+K
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 506 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFA 661
KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/64 (54%), Positives = 42/64 (65%)
Frame = +1
Query: 70 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMR 249
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LR S VLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 250 KAXK 261
+ K
Sbjct: 64 RCIK 67
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 99 bits (238), Expect = 2e-21
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Frame = +3
Query: 228 GKKHYDAQSXKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARP 401
GK + K H DN N +L+P + GNVG +FT+GDL EVR+++ KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 402 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+K
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 506 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFA 661
KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/64 (54%), Positives = 42/64 (65%)
Frame = +1
Query: 70 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMR 249
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LR S VLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 250 KAXK 261
+ K
Sbjct: 64 RCIK 67
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 99 bits (238), Expect = 2e-21
Identities = 50/96 (52%), Positives = 65/96 (67%), Gaps = 2/96 (2%)
Frame = +3
Query: 228 GKKHYDAQSXKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARP 401
GK + K H DN N +L+P + GNVG +FT+GDL EVR+++ KV APAR
Sbjct: 57 GKNTLIRRCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARV 116
Query: 402 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+K
Sbjct: 117 GLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINK 152
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 506 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFA 661
KGT+EII V ++K GDKVG+SE+ LL L I PFSYGLV+ VYDSG++F+
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFS 203
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/64 (54%), Positives = 42/64 (65%)
Frame = +1
Query: 70 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMR 249
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LR S VLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 250 KAXK 261
+ K
Sbjct: 64 RCIK 67
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 32.7 bits (71), Expect = 0.28
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Frame = +3
Query: 267 LDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDKLLXNKVQAPARPGAIAPLSV---- 425
L N AL+KL LPH ++GN+GF+ + + ++ D +L + A P + LS
Sbjct: 396 LGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDHNSFVGALPDHLGNLSARLIS 455
Query: 426 VIPAHN--TGLGPEKTSFFQALSI 491
I HN G PEK S +L +
Sbjct: 456 FIADHNKLAGSLPEKMSNLSSLEL 479
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 28 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 207
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 208 XSSXV-LMGKNTM 243
SS + L GK M
Sbjct: 63 SSSRIFLAGKKVM 75
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 31.9 bits (69), Expect = 0.49
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 232 KNTMMRKAXKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWXTKSRLQLVPVPL 411
K+ MM ++W +QP +R L S + LR+V W + +RLQ +P PL
Sbjct: 392 KSCMMAAVQSSSWADLQPELLGLVLTR--LPSLAD-RVRLRAVCRPWRSNARLQPLPPPL 448
Query: 412 P 414
P
Sbjct: 449 P 449
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 40 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSX 219
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 220 V-LMGKNTM 243
+ L GK M
Sbjct: 203 IFLAGKKVM 211
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Frame = +3
Query: 279 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLXNKVQAPARPGAIAPLSVVIPA 437
PAL+K L H K VG + T GDL + + L+ +KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>01_01_0703 -
5425713-5425862,5426302-5426451,5426853-5426964,
5427120-5427481,5427578-5427712,5427812-5427889,
5427989-5428174,5428266-5428452,5428552-5428658,
5428732-5428806,5428885-5429040,5429165-5429437,
5429548-5429643,5429724-5429814,5429883-5430385
Length = 886
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/50 (28%), Positives = 31/50 (62%)
Frame = +2
Query: 518 EIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFALK 667
E++ +++P D VG S ++++ +++ P+S VV+ +Y+S + A K
Sbjct: 346 EMLPSGFLIRPSD-VGGSVIHIVDHMDLEPWSVPEVVRPLYESSAMVAQK 394
>11_06_0266 - 21791757-21792982,21793154-21793178
Length = 416
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/62 (33%), Positives = 26/62 (41%)
Frame = +1
Query: 229 GKNTMMRKAXKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWXTKSRLQLVPVP 408
GK T+ R+A + +W I R L S LRSV W +RL P P
Sbjct: 4 GKGTIGREAQRRSWADIPADIIGVVVGR--LPSVED-RARLRSVCQAWRAAARLHRPPPP 60
Query: 409 LP 414
LP
Sbjct: 61 LP 62
>03_02_0600 -
9748382-9748933,9749805-9749840,9751164-9751218,
9751588-9751697,9751955-9752602
Length = 466
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 175 QQMQQIRISLRXSSXVLMGKNTMMRKAXK-TTWTTIQP 285
+Q+Q IR +L + +L+ KNT++ KA + T W ++P
Sbjct: 74 KQLQGIRDTLPETCRLLVAKNTLVGKAIEGTPWEALKP 111
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +1
Query: 268 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWXTKSRLQLVP 402
W ++ HTS TL+ SP+ +S+ T+C+ + + P
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMMSSKP 524
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -3
Query: 407 GTGTSWSLDFVXQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 279
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +1
Query: 400 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 504
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>06_03_1442 -
30172595-30172606,30172607-30172684,30173034-30173435,
30173503-30173577,30173667-30173822,30173952-30174143,
30174202-30174208,30175866-30175918
Length = 324
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 518 EIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFALK 667
E++ +++P D G S ++++ +++ P+S VV+ +Y+S + A K
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQK 157
>06_03_1439 -
30157110-30157121,30157122-30157199,30157549-30157950,
30158018-30158092,30158182-30158337,30158467-30158658,
30158717-30158723,30160381-30160433
Length = 324
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 518 EIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFALK 667
E++ +++P D G S ++++ +++ P+S VV+ +Y+S + A K
Sbjct: 109 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQK 157
>06_03_1427 -
30090464-30090475,30090476-30090553,30090903-30091304,
30091372-30091446,30091536-30091691,30091821-30092012,
30093735-30093908,30094966-30095123,30096738-30096914,
30096996-30097035
Length = 487
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 518 EIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFALK 667
E++ +++P D G S ++++ +++ P+S VV+ +Y+S + A K
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQK 320
>06_03_1422 +
30058936-30058975,30059057-30059233,30060848-30061005,
30062063-30062236,30063959-30064150,30064280-30064435,
30064525-30064599,30064667-30065068,30065418-30065495,
30065840-30066173,30066275-30066339
Length = 616
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/50 (26%), Positives = 30/50 (60%)
Frame = +2
Query: 518 EIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFALK 667
E++ +++P D G S ++++ +++ P+S VV+ +Y+S + A K
Sbjct: 272 EMLPSGFLIRPSDG-GGSVIHIVDHMDLEPWSVPEVVRPLYESSALVAQK 320
>12_02_0142 -
14306325-14306490,14306584-14306687,14306788-14306967,
14307155-14307253,14307346-14307535,14307722-14307748,
14308190-14308506,14308532-14308675,14308799-14308905,
14309085-14309357,14309470-14309827
Length = 654
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = -2
Query: 675 VQNFSAKIVPESYTCLTTRPYENGEMFNMLRRLASEAPTLSPGFKMCTSLMI 520
V FSA+ + E + CL +P G + L ++ SEA + P F++ +++I
Sbjct: 72 VSKFSARGLVEEFVCLGIQPLTAGWNIS-LGQMLSEATSTLPPFEVDLNIVI 122
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +1
Query: 400 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPK 501
P P PH S PP P S + LSSKL P P+
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPE 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,339,936
Number of Sequences: 37544
Number of extensions: 444389
Number of successful extensions: 1303
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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