Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20860
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 132 2e-31
SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_31430| Best HMM Match : Exo70 (HMM E-Value=2) 29 2.7
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78) 29 3.5
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0) 29 4.6
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 28 6.1
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69) 28 6.1
SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6) 28 6.1
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 8.1
SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_40105| Best HMM Match : La (HMM E-Value=4.3) 28 8.1
SB_34066| Best HMM Match : Queuosine_synth (HMM E-Value=2) 28 8.1
SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38) 28 8.1
SB_18699| Best HMM Match : Queuosine_synth (HMM E-Value=5.3) 28 8.1
SB_17112| Best HMM Match : Trypsin (HMM E-Value=0) 28 8.1
SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4) 28 8.1
SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4) 28 8.1
SB_18050| Best HMM Match : Queuosine_synth (HMM E-Value=7.8) 28 8.1
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 28 8.1
SB_12750| Best HMM Match : CX (HMM E-Value=7.7) 28 8.1
SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 132 bits (320), Expect = 2e-31
Identities = 60/94 (63%), Positives = 75/94 (79%)
Frame = +3
Query: 228 GKKHYDAQSXKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARPGA 407
GK ++ + HL+NNP LEKLLPHIKGN+GFVFT+ DL +VR ++ NKV APA+ G
Sbjct: 38 GKNTMIRKAIRGHLENNPDLEKLLPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGV 97
Query: 408 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++
Sbjct: 98 IAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIAR 131
Score = 72.1 bits (169), Expect = 4e-13
Identities = 34/48 (70%), Positives = 38/48 (79%)
Frame = +1
Query: 118 QLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMRKAXK 261
Q LDEYPK F+VG DNVGS+QMQ IR SLR VLMGKNTM+RKA +
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIR 48
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 491 PYQNFKGTIEIINDVHILKPGDKVGA 568
P + +GTIEIINDVH++K +K+ A
Sbjct: 126 PTKIARGTIEIINDVHLIKKDEKLKA 151
>SB_22968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1332
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/80 (26%), Positives = 36/80 (45%)
Frame = +1
Query: 250 KAXKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWXTKSRLQLVPVPLPHCQSS 429
KA +TWT + +RN T ++ L +P L N + Q +PV + +C+++
Sbjct: 93 KARSSTWTRTRNARNLIDTQQSQLEMNNPQH--LHRTYNFSMMNNVRQPIPVLVNNCRAN 150
Query: 430 FPPTTPASVQRKPLSSKLFP 489
S ++ SS L P
Sbjct: 151 DKLVESQSKRKSARSSNLIP 170
>SB_31430| Best HMM Match : Exo70 (HMM E-Value=2)
Length = 853
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -1
Query: 598 VQHVEKVGFRSSNLVTGLQDVYIVDDFNSTFEILVGMERAWKKEVF 461
V++ EK GF +L+ L D+Y+ + + + +R+++KE+F
Sbjct: 719 VKNPEKYGFEPKSLLDRLTDIYVHLNTDEFATAVASDQRSYRKELF 764
>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
Length = 230
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 612 ENGEMFNMLRRLASEAPTLSPGFKMCTSLMISIVPLKFW 496
+N E + LRR+ +E+ T P CTSLM +I +K W
Sbjct: 90 KNAETIDALRRVIAESYTPRP----CTSLMNAIFDIKEW 124
>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
Length = 870
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 485 KSLEERGFLWTEAGVVGGNDD*QWG 411
K+LEERG L+ +GV GG + ++G
Sbjct: 160 KALEERGLLFVGSGVSGGEEGARYG 184
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 157 ADNVGSQQMQQIRISLRXSSXVLMGKNTMMRKAXKTT 267
+ +VGS + QQ+R + SS V G+N +R K+T
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLKST 1345
>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
Length = 430
Score = 28.3 bits (60), Expect = 6.1
Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +1
Query: 139 KCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMRKAXKTTWTTIQPSRNCCHTSRAT 318
+C + V S +QQ +S+R + + ++ + +I+P+R C HTS
Sbjct: 51 RCCQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSTYVQQGVVSIRPARCCQHTSSKV 110
Query: 319 LAS-CSPAETSLRSVTNCWXTKSRLQLVPVPLPHCQSSFPPTTPA 450
L++ S+R C T S++ V + Q PA
Sbjct: 111 LSTYVQLGVVSIRPARCCQHTSSKVLSAYVQQAYVQQGVVSIRPA 155
>SB_2310| Best HMM Match : Borrelia_orfA (HMM E-Value=1.6)
Length = 725
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Frame = +2
Query: 479 SSFHPYQNFKGTIEIINDVH---ILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSG 649
SS +N GT ++ +++ ++ + GA++ + L I+PF + ++K++ + G
Sbjct: 60 SSKGTIKNSAGTDKLFSNMFPDSVIAKQFQCGATKCSYLICFGIAPFFHDELMKRLQEQG 119
Query: 650 TIFALKF 670
T++ + F
Sbjct: 120 TMYVISF 126
>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
Length = 595
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +1
Query: 253 AXKTTWTTIQPSRNCCHTSRATLASCSPA 339
A ++ WT P C H ++ A C PA
Sbjct: 16 AGESNWTRCSPVCKCAHIDKSMAAVCRPA 44
>SB_51101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 517 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 552
>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 400 PVPLPHCQSSFPPTTPASV 456
PVP PH ++S PT P SV
Sbjct: 16 PVPRPHARASASPTHPTSV 34
>SB_40105| Best HMM Match : La (HMM E-Value=4.3)
Length = 434
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 126 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 161
>SB_34066| Best HMM Match : Queuosine_synth (HMM E-Value=2)
Length = 318
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 126 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 161
>SB_32083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 85
Score = 27.9 bits (59), Expect = 8.1
Identities = 19/73 (26%), Positives = 28/73 (38%)
Frame = +1
Query: 160 DNVGSQQMQQIRISLRXSSXVLMGKNTMMRKAXKTTWTTIQPSRNCCHTSRATLASCSPA 339
D +G QQ + ++ L L+G + R+ + T SR C + SCS
Sbjct: 1 DGIGQQQPKLYKLVLPNFGFQLIGYPGIYRQTGRGEEVTWHGSRTCTLHRKLAGVSCSCC 60
Query: 340 ETSLRSVTNCWXT 378
SL W T
Sbjct: 61 GNSLLHTHFTWTT 73
>SB_23671| Best HMM Match : Tetraspannin (HMM E-Value=6.6e-38)
Length = 919
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 285 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 320
>SB_18699| Best HMM Match : Queuosine_synth (HMM E-Value=5.3)
Length = 230
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 14 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 49
>SB_17112| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 636
Score = 27.9 bits (59), Expect = 8.1
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = -2
Query: 684 WFDVQNFSAKIVPESYTCLTT-RPYENGEMFNMLR-RLASEAPTLSPGF-KMCTSLMISI 514
++ +Q S IVP SY + +++ + + R RLAS+ P+L GF + + M++I
Sbjct: 187 YYSIQGVSLFIVPLSYMSWAHYKIFKSLKKHQLARARLASKTPSLKEGFNEKKITKMLAI 246
Query: 513 VPLKF 499
V L F
Sbjct: 247 VTLIF 251
>SB_56698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 14 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 49
>SB_43624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1018
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 656 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 691
>SB_42064| Best HMM Match : Queuosine_synth (HMM E-Value=2.4)
Length = 623
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 126 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 161
>SB_27266| Best HMM Match : GBP_C (HMM E-Value=1.4)
Length = 934
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 247 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 282
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 322 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 357
>SB_18050| Best HMM Match : Queuosine_synth (HMM E-Value=7.8)
Length = 230
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 14 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 49
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 571 RSSNLVTGLQDVYIVDDFNSTFEI 500
R NLVT L DVYI ++ S +I
Sbjct: 295 RDKNLVTNLSDVYIGSNYRSILDI 318
>SB_12750| Best HMM Match : CX (HMM E-Value=7.7)
Length = 279
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 168 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 203
>SB_9498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 651
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +2
Query: 563 GASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKF 670
GA++ + L I+PF + ++K++ + GT++ + F
Sbjct: 118 GATKCSYLICFGIAPFFHDELMKRLQEQGTMYVISF 153
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,876,642
Number of Sequences: 59808
Number of extensions: 492249
Number of successful extensions: 1361
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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