Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20860
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   122   2e-28
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    30   1.8  
U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical pr...    29   3.1  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.       27   9.4  
AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  122 bits (295), Expect = 2e-28
 Identities = 58/94 (61%), Positives = 70/94 (74%)
 Frame = +3

Query: 228 GKKHYDAQSXKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARPGA 407
           GK     ++ + HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLL N+  APA+ GA
Sbjct: 56  GKNTMIRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115

Query: 408 IAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
           IAP  V +P  NTG+GPEKTSFFQAL IPTKI++
Sbjct: 116 IAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIAR 149



 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 40/66 (60%), Positives = 56/66 (84%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTM 243
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++R  + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 244 MRKAXK 261
           +RKA +
Sbjct: 61  IRKALR 66



 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 38/56 (67%), Positives = 49/56 (87%)
 Frame = +2

Query: 491 PYQNFKGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIF 658
           P +  +GTIEI+NDVH++K GDKVGASE+ LLNML ++PFSYGLVV+QVYD GT++
Sbjct: 144 PTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLY 199


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +1

Query: 37  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSS 216
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 217 XVLMGKNTMM 246
               GKN ++
Sbjct: 65  RFFFGKNNVI 74



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 285 LEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARPGAIAPLSVVIP-AHNTGLGPE 461
           L K    +KG  G +FT     EV  +      +  AR G +A  +VV+P    +     
Sbjct: 90  LHKASAILKGQCGLMFTNMSKKEVEAEFSEASEEDYARVGDVATETVVLPEGPISQFAFS 149

Query: 462 KTSFFQALSIPTKISK 509
                + L +PTK+ K
Sbjct: 150 MEPQLRKLGLPTKLDK 165


>U80836-6|AAB37894.2|  259|Caenorhabditis elegans Hypothetical
           protein B0432.8 protein.
          Length = 259

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 553 TGLQDVYIVDDFNSTFEILVGMERAWKKEVFSG 455
           TG+Q +    +F S FE  +G+ + W   V++G
Sbjct: 27  TGIQKMINFPEFESQFEKSIGISKKWPGSVYTG 59


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +1

Query: 19  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 132
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = +1

Query: 259 KTTWTTIQPSRNCCHTSRATLASCSPAET-SLRSVTNCWXTKSRLQLVPVPLPHCQSSFP 435
           +T +   QP+ N     R     C+P     ++S    W T S+   +P P P+  +  P
Sbjct: 287 RTHYLQCQPAPNNLFCGRWQRMPCAPGTVFDVQSQVCVWDTNSQPGTLPTPAPYVSTQAP 346


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 280 QPSRNCCHTSRATLASCSPAETSLRSVTNCWX--TKSRLQLVPVPLPHCQSSFPPTTPAS 453
           Q  +N C ++ +     S  + S ++ ++C+   T + +Q  P  +P C+ S    TPA+
Sbjct: 90  QSCQNQCQSAPSVSQCQSTCQQSCQT-SSCYTPTTPAPVQCQPSCMPACEQSCVVQTPAA 148

Query: 454 VQRKP 468
           VQ  P
Sbjct: 149 VQCVP 153


>Z32683-4|CAA83629.1|  443|Caenorhabditis elegans Hypothetical
           protein R07E5.6 protein.
          Length = 443

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 388 LQLVPVPLPHCQSSFPPTTPASVQRKPL 471
           L  +  P P    S PPT P S  RKP+
Sbjct: 377 LSTLATPSPVPSPSVPPTAPPSTPRKPM 404


>Z29561-4|CAD91697.1|  498|Caenorhabditis elegans Hypothetical
           protein R10E12.1d protein.
          Length = 498

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 400 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRY 513
           P+P P  Q S   T  A  Q  P   +  P + +FQ++
Sbjct: 386 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQH 423


>Z29561-2|CAD54152.1|  882|Caenorhabditis elegans Hypothetical
           protein R10E12.1b protein.
          Length = 882

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 400 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRY 513
           P+P P  Q S   T  A  Q  P   +  P + +FQ++
Sbjct: 770 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQH 807


>Z29561-1|CAA82667.2|  861|Caenorhabditis elegans Hypothetical
           protein R10E12.1a protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 400 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRY 513
           P+P P  Q S   T  A  Q  P   +  P + +FQ++
Sbjct: 749 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQH 786


>U73679-1|AAC67305.1|  861|Caenorhabditis elegans YNK1-a protein.
          Length = 861

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 400 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRY 513
           P+P P  Q S   T  A  Q  P   +  P + +FQ++
Sbjct: 749 PIPPPRTQQSMQATPGAPPQYNPYQQQQQPQMQQFQQH 786


>AC006761-8|AAF60552.2|  524|Caenorhabditis elegans Hypothetical
           protein Y41G9A.6 protein.
          Length = 524

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +1

Query: 316 TLASCSPAETSLRSVTNCWXTKSRLQL-VPVPL-PHCQSSFPPTTPASVQRKPLSSKLFP 489
           T+ S  P      ++     T+S + L + VP  P   + FPP TP   +  P ++ L  
Sbjct: 451 TVVSSEPNHIDFSAINQLSHTQSPVNLQIRVPQQPLGAAGFPPVTPGLFENNPQNTDLAD 510

Query: 490 SLPKF 504
            L  F
Sbjct: 511 LLQNF 515


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,736
Number of Sequences: 27780
Number of extensions: 352491
Number of successful extensions: 1144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)