Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20860
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...    98   4e-21
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...    98   4e-21
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)       97   1e-20
At3g50610.1 68416.m05534 hypothetical protein                          33   0.23 
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    29   2.2  
At2g41660.1 68415.m05147 expressed protein contains Pfam profile...    29   3.8  
At5g58350.1 68418.m07306 protein kinase family protein contains ...    28   6.6  
At5g04470.1 68418.m00445 expressed protein                             28   6.6  
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    27   8.8  
At5g55730.1 68418.m06947 fasciclin-like arabinogalactan-protein ...    27   8.8  
At3g56700.1 68416.m06307 male sterility protein, putative simila...    27   8.8  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
 Frame = +3

Query: 228 GKKHYDAQSXKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARP 401
           GK     +S + H +N  N A+  LLP ++GNVG +FT+GDL EV +++   KV APAR 
Sbjct: 56  GKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115

Query: 402 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
           G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+K
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/52 (63%), Positives = 42/52 (80%)
 Frame = +2

Query: 506 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFA 661
           KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 202



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/66 (51%), Positives = 44/66 (66%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTM 243
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LR  S VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 244 MRKAXK 261
           M+++ +
Sbjct: 61  MKRSVR 66


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score = 98.3 bits (234), Expect = 4e-21
 Identities = 49/96 (51%), Positives = 66/96 (68%), Gaps = 2/96 (2%)
 Frame = +3

Query: 228 GKKHYDAQSXKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARP 401
           GK     +S + H +N  N A+  LLP ++GNVG +FT+GDL EV +++   KV APAR 
Sbjct: 56  GKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 115

Query: 402 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
           G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+K
Sbjct: 116 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 151



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 33/52 (63%), Positives = 42/52 (80%)
 Frame = +2

Query: 506 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFA 661
           KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F+
Sbjct: 151 KGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFS 202



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 34/66 (51%), Positives = 44/66 (66%)
 Frame = +1

Query: 64  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTM 243
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LR  S VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 244 MRKAXK 261
           M+++ +
Sbjct: 61  MKRSVR 66


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 49/96 (51%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
 Frame = +3

Query: 228 GKKHYDAQSXKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLXNKVQAPARP 401
           GK     +S + H D   N A   LLP ++GNVG +FT+GDL EV +++   KV APAR 
Sbjct: 57  GKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARV 116

Query: 402 GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISK 509
           G +AP+ VV+   NTGL P +TSFFQ L+IPTKI+K
Sbjct: 117 GLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINK 152



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 33/51 (64%), Positives = 41/51 (80%)
 Frame = +2

Query: 506 KGTIEIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIF 658
           KGT+EII  V ++K GDKVG+SEA LL  L I PFSYGLVV+ VYD+G++F
Sbjct: 152 KGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVF 202



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 33/61 (54%), Positives = 42/61 (68%)
 Frame = +1

Query: 79  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRXSSXVLMGKNTMMRKAX 258
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LR  S VLMGKNTMM+++ 
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 259 K 261
           +
Sbjct: 67  R 67


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
 Frame = +3

Query: 219 RAHGKKHYDAQSXKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRD-KLLXNKVQAPA 395
           + + + H+ A    D +  +P     + H KGNV     + D       KLL   VQ   
Sbjct: 17  KTNDQDHFKAGFTDDFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHF 76

Query: 396 RPGAIAPLSVVIPAHNTGLGPEK 464
           + G+    +   P H+ G+G +K
Sbjct: 77  KTGSTDDFAPTSPGHSPGVGHKK 99


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 273 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRDKLL 371
           N P ++K    PHI   VGF+ T+GD+  + D  L
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVDPKL 815


>At2g41660.1 68415.m05147 expressed protein contains Pfam profile
           PF04759: Protein of unknown function, DUF617
          Length = 297

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +1

Query: 433 PPTTPA--SVQRKPLSSKLFPSLPKFQRYY*NHQRCTHL 543
           P T+PA  S  R P SS L PS+P+ + +    +RC+++
Sbjct: 22  PVTSPARSSHVRSPSSSALIPSIPEHELFLVPCRRCSYV 60


>At5g58350.1 68418.m07306 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 571

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 684 WFDVQNFSAKIVPESYTCLTTRPYENGEMFNMLRRLASEAPTLSPG 547
           W DV N +   + E +T  T R Y+N  +   +R + S A  +  G
Sbjct: 87  WIDVHNHTLNFITELFTSGTLRQYKNKYLRIDIRAIKSWARQILEG 132


>At5g04470.1 68418.m00445 expressed protein
          Length = 127

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 406 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQ 507
           P P  Q   PP+TP+S+  +    KL  SL K++
Sbjct: 51  PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYE 84


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/54 (25%), Positives = 32/54 (59%)
 Frame = +2

Query: 518 EIINDVHILKPGDKVGASEANLLNMLNISPFSYGLVVKQVYDSGTIFALKFWTS 679
           E+++  ++++P D  G S  ++++ LN+  +S   V++ +Y+S  + A K   S
Sbjct: 310 EMLSSGYLIRPCDG-GGSIIHIVDHLNLEAWSVPDVLRPLYESSKVVAQKMTIS 362


>At5g55730.1 68418.m06947 fasciclin-like arabinogalactan-protein
           (FLA1) identical to
           gi|13377776||AAK20857|13377775|gb|AF333970
          Length = 424

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 429 IPAHNTGLGPEKTSFFQALSIPTKISKVLLKSS 527
           +P +     P+K +F   L++PT  S  +LKS+
Sbjct: 235 LPKYKNLTAPKKEAFLDFLAVPTYYSMAMLKSN 267


>At3g56700.1 68416.m06307 male sterility protein, putative similar
           to SP|Q08891 Male sterility protein 2 {Arabidopsis
           thaliana}; contains Pfam profile PF03015: Male sterility
           protein
          Length = 527

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 283 PSRNCCHTSRATLASCSPAETSLRSVTN 366
           P R   HT+R    SC   ETS  +VT+
Sbjct: 33  PRRRLSHTTRRVQTSCFYGETSFEAVTS 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,991,340
Number of Sequences: 28952
Number of extensions: 338882
Number of successful extensions: 1007
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)