Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20859
(632 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 110 2e-25
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 65 7e-12
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 48 9e-07
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 40 4e-04
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 40 4e-04
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 33 0.045
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 30 0.32
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 29 0.42
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 28 0.97
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 28 0.97
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 3.9
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 26 3.9
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.9
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 25 6.9
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 6.9
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 110 bits (264), Expect = 2e-25
Identities = 53/85 (62%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGN 432
G+SAAVSKTA APIERVKL++Q Q + + RYKGI + F R E+G +S WRGN
Sbjct: 35 GVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGN 94
Query: 433 FANVIRYFPTQALNFAFKDKYKQVF 507
ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 95 TANVLRYFPTQALNFAFKDKFKKMF 119
Score = 29.1 bits (62), Expect = 0.56
Identities = 18/83 (21%), Positives = 35/83 (42%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
G + A S V ++ + L S + ++++ G+VD + + + G +RG
Sbjct: 140 GAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFG 199
Query: 436 ANVIRYFPTQALNFAFKDKYKQV 504
+V+ + L F D K V
Sbjct: 200 PSVVGIVVYRGLYFGMYDTLKPV 222
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 65.3 bits (152), Expect = 7e-12
Identities = 41/125 (32%), Positives = 64/125 (51%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
G++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +G + F+RGN
Sbjct: 28 GVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNG 80
Query: 436 ANVIRYFPTQALNFAFKDKYKQVFPAALTRRRSSGVTSLVIWXXXXXXXXXLCASCTPSN 615
N +R FP A+ FA + KQ AL R + + CA+ P +
Sbjct: 81 TNCLRAFPYGAVQFATFNMLKQ---RALKNRSHQNLENHERLLFGAIAGAASCATTYPLD 137
Query: 616 FARTR 630
ARTR
Sbjct: 138 IARTR 142
Score = 33.5 bits (73), Expect = 0.026
Identities = 17/74 (22%), Positives = 33/74 (44%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
G + + +T P + ++ QV + YK I A I K +G F+RG
Sbjct: 234 GFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYS 290
Query: 436 ANVIRYFPTQALNF 477
+N+++ P ++ +
Sbjct: 291 SNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.4 bits (110), Expect = 9e-07
Identities = 28/91 (30%), Positives = 49/91 (53%)
Frame = +1
Query: 232 VR*GLPGCGISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGX 411
V+ G+ G G + V+K+ VAP++RVK++ Q H S + A R+ G+ A I G
Sbjct: 18 VKSGIAG-GTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 412 LSFWRGNFANVIRYFPTQALNFAFKDKYKQV 504
++G+ A + R FP + F ++ ++V
Sbjct: 76 HGLYQGHTATLYRVFPYAGIKFVAYEQVRRV 106
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 39.5 bits (88), Expect = 4e-04
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 283 AVAPIERVKLM--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGXLSFWRGNFANVIRY 453
AVA I V + L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 454 FPTQALNFAFKDKYKQVFPAALTRRRSSGVTSLV 555
P +AL FA D Y +++ R+ SS S++
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 33.1 bits (72), Expect = 0.034
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 256 GISAAVSKT-AVAPIERVKLMLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRG 429
G A ++T V P E +K+ LQ V++ SK Y G VD F +I K++ L+ + G
Sbjct: 111 GSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNG 163
Query: 430 NFANVIRYFPTQALNFAFKDKYKQVFPAALTR 525
A + R+ A F K + A +R
Sbjct: 164 FEATMWRHVVWNAGYFGVIQKIRNSLTPASSR 195
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/81 (24%), Positives = 39/81 (48%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNFA 438
+S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSP 400
Query: 439 NVIRYFPTQALNFAFKDKYKQ 501
N+++ P+ A+++ + K+
Sbjct: 401 NLLKVAPSVAISYLVYENCKK 421
Score = 29.1 bits (62), Expect = 0.56
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGXLSFWRGN 432
G++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G ++RG
Sbjct: 236 GMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGV 291
Query: 433 FANVIRYFPTQALNFAFKDKYKQVFPAALTRR 528
++ FP A + + K+ + L R
Sbjct: 292 LVGILGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 32.7 bits (71), Expect = 0.045
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +1
Query: 244 LPGCGISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFW 423
L G GI+ ++ P E V+ L+ S I +Y G++ F + EQG + +
Sbjct: 276 LGGAGIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLY 332
Query: 424 RGNFANVIRYFPTQALNF 477
G A+++R P + F
Sbjct: 333 GGLTAHLLRVVPNACILF 350
Score = 25.4 bits (53), Expect = 6.9
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVS----KQIAADQR-----YKGIVDAFV---RIPK 399
G++ + A AP++ VK LQ KQ A + Y+ +D + +
Sbjct: 56 GVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTAKSKSPLTAAYRHFMDTCIILKNVKV 115
Query: 400 EQGXLSFWRGNFANVIRYFPTQALNF 477
+G + +RG N+I P +++NF
Sbjct: 116 HEGTRALFRGLGPNLIGTIPARSINF 141
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 29.9 bits (64), Expect = 0.32
Identities = 17/82 (20%), Positives = 35/82 (42%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNFA 438
++ ++ PI+ VK +Q ++A + YK + +I + G L FW G
Sbjct: 212 VAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATP 265
Query: 439 NVIRYFPTQALNFAFKDKYKQV 504
+ R + + F +K ++
Sbjct: 266 RLARLILSGGIVFTVYEKVMEI 287
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 29.5 bits (63), Expect = 0.42
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
GIS+ + + +AP + +K+ +Q+ S + F +++G + WRGN
Sbjct: 24 GISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWRGNV 72
Query: 436 ANVIRYFPTQALNFAFKDKYKQV 504
+ Y A F K K +
Sbjct: 73 VAELLYLVYGAAEFVAFSKLKHL 95
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.3 bits (60), Expect = 0.97
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGXLSFWR 426
G + S VAP++ VK Q Q + G + + I +G +R
Sbjct: 13 GAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYR 72
Query: 427 GNFANVIRYFPTQALNFAFKDKYKQVF 507
G ++ Y P+ ++ F +K K +F
Sbjct: 73 GVGPMMLGYLPSWSIYFVVYEKCKVLF 99
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 346 AADQRYKGIVDAFVRIPKEQGXLSFWRGNFANV 444
A Y DAF +I K +G +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 28.3 bits (60), Expect = 0.97
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 386 TKASTIPL*RWSAAICLLTCCTWSISLTRSIGATAV 279
T+ + + + WSA I +LT C ISLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 366 LVTLVGGDLLADVLYLEHQLDTLY 295
L T VG L+++ ++EH+LD Y
Sbjct: 989 LATTVGFHYLSEINFIEHELDNWY 1012
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 253 CGISAAVSKTAV-APIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRG 429
CG++A V + V P+E +K Q+ +++ + + +G F+RG
Sbjct: 89 CGMTAEVVSSFVWTPLEVIKARTQISQKGS----------VINTISTLARSEGLKGFYRG 138
Query: 430 NFANVIRYFPT 462
+ V Y PT
Sbjct: 139 YWMGVAIYLPT 149
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 82 YEITPNLLFKNQELVFRDPPSACAATPTSTY 174
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 25.4 bits (53), Expect = 6.9
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 6/78 (7%)
Frame = +1
Query: 163 TSTYSPSEDHIIEQNVEPRR-----SGRVR*GLPGCGISAAVSKTAVA-PIERVKLMLQV 324
+STY H+ ++P + + L CG S + SKTA + +E +K LQ
Sbjct: 105 SSTYRDIVSHVTAMCMDPNSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIK-KLQE 163
Query: 325 QHVSKQIAADQRYKGIVD 378
++ + A R + +VD
Sbjct: 164 KNEIPIVRARMRIRIVVD 181
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.4 bits (53), Expect = 6.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = +1
Query: 259 ISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRG 429
IS + V P+E V++ LQ+Q K + Y G D +I + G +G
Sbjct: 121 ISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,845
Number of Sequences: 5004
Number of extensions: 44721
Number of successful extensions: 140
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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