Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20859
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   155   3e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   155   3e-40
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      30   0.016
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.5  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   9.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (377), Expect = 3e-40
 Identities = 69/84 (82%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
           G++AA+SKT VAPIERVKL+LQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 436 ANVIRYFPTQALNFAFKDKYKQVF 507
           ANVIRYFPTQALNFAFKDKYKQVF
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVF 101



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +3

Query: 519 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLE 614
           DK TQF RYF            TSLCFVYPL+
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLD 137



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 MSNLADPVAFAKDFLA 253
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 29.1 bits (62), Expect = 0.038
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 292 PIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNFANVIR 450
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.4 bits (53), Expect = 0.46
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G    +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFP 510
            +V      +A  F F D  + + P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP 205


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  155 bits (377), Expect = 3e-40
 Identities = 69/84 (82%), Positives = 79/84 (94%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
           G++AA+SKT VAPIERVKL+LQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN 
Sbjct: 18  GVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNL 77

Query: 436 ANVIRYFPTQALNFAFKDKYKQVF 507
           ANVIRYFPTQALNFAFKDKYKQVF
Sbjct: 78  ANVIRYFPTQALNFAFKDKYKQVF 101



 Score = 37.5 bits (83), Expect = 1e-04
 Identities = 17/32 (53%), Positives = 18/32 (56%)
 Frame = +3

Query: 519 DKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLE 614
           DK TQF RYF            TSLCFVYPL+
Sbjct: 106 DKNTQFLRYFVGNLASGGAAGATSLCFVYPLD 137



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 15/16 (93%), Positives = 15/16 (93%)
 Frame = +2

Query: 206 MSNLADPVAFAKDFLA 253
           MS LADPVAFAKDFLA
Sbjct: 1   MSGLADPVAFAKDFLA 16



 Score = 29.1 bits (62), Expect = 0.038
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 292 PIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNFANVIR 450
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 25.4 bits (53), Expect = 0.46
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = +1

Query: 256 GISAAVSKTAVAPIERVKLMLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGXLSFWRGNF 435
           G + A S   V P++  +  L    V K    ++ + G+ +   +I K  G    +RG  
Sbjct: 123 GAAGATSLCFVYPLDFARTRLAAD-VGKA-GGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 436 ANVIRYFPTQALNFAFKDKYKQVFP 510
            +V      +A  F F D  + + P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLP 205


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 624 TCEVRGGTRSTERWLRRHHRRPDYQRSNARTASSC 520
           TC+V G T ST+  L+RH  +  +Q  N+   + C
Sbjct: 373 TCDVCGKTLSTKLTLKRHKEQQHFQPLNSAVCALC 407


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 630 TGTCEVRGGTRSTERWLR 577
           T TC VRG    T  WL+
Sbjct: 326 TFTCNVRGNPIKTVSWLK 343


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 621 CEVRGGTRSTERWLR 577
           CEV G T  T  WL+
Sbjct: 829 CEVHGDTPVTVTWLK 843


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 621 CEVRGGTRSTERWLR 577
           CEV G T  T  WL+
Sbjct: 825 CEVHGDTPVTVTWLK 839


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 131 VIPHPRVPQLPPRHIHLVKIT 193
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,164
Number of Sequences: 438
Number of extensions: 3270
Number of successful extensions: 17
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)