Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20858
         (675 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.43 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   0.99 
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      24   0.99 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.0  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   4.0  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   5.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   5.3  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   7.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   9.2  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.2  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +2

Query: 215 SQRPFLCLCRFRIAYATGTDSPDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQ 385
           S RPF    +  +  A G  S +     +    F+ +RT  LA  + TN   N +++
Sbjct: 67  SCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTNNGTNKNMR 123


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 34  NADLSKMLGKKWRSLTPQDRRPFVEEAER 120
           +A ++++LG++W +L  +++  + E A R
Sbjct: 506 SAAINQILGRRWHALGREEQAKYYELARR 534


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 8/29 (27%), Positives = 20/29 (68%)
 Frame = +1

Query: 34  NADLSKMLGKKWRSLTPQDRRPFVEEAER 120
           +A ++++LG++W +L  +++  + E A R
Sbjct: 398 SAAINQILGRRWHALGREEQAKYYELARR 426


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 499 SFLSRSRQETHLGSVRELR 443
           SFLS+   E   GS+RE++
Sbjct: 402 SFLSKRNSEKKCGSLREIK 420


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 343 LGLPNKPAVQRSRSNAGIVSGKVSGAASRRSTPAEAP----LPTPDAS 474
           + LP K  +   + ++ I++ KVS + +   TP+  P     P+ DAS
Sbjct: 69  VALPPKREIPSPKRSSPILAEKVSVSPTTPPTPSPPPEERLTPSKDAS 116


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 278 PDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHV 382
           P+T   H PGA +  Y+   +    Q N +++G V
Sbjct: 406 PNTHMGHEPGAAY--YQNENM---LQKNAEYSGKV 435


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 278 PDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHV 382
           P+T   H PGA +  Y+   +    Q N +++G V
Sbjct: 354 PNTHMGHEPGAAY--YQNENM---LQKNAEYSGKV 383


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 455 YRPQMRLLSRTRKKTSSTGEAKDFEPFV 538
           Y  +  ++    +KT + G   DFE FV
Sbjct: 305 YTTREGMIVEMMRKTETPGMPNDFEEFV 332


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 537 SISDTYSPYKSYRPGPTRSPRGR 605
           SI+D  SP+     GP   PR R
Sbjct: 137 SITDWMSPFDRVVCGPNGCPRRR 159


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 537 SISDTYSPYKSYRPGPTRSPRGR 605
           SI+D  SP+     GP   PR R
Sbjct: 196 SITDWMSPFDRVVCGPNGCPRRR 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,844
Number of Sequences: 336
Number of extensions: 3126
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)