Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20858
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 40 2e-04
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc... 31 0.20
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc... 31 0.20
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 29 0.81
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 29 0.81
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 28 1.1
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 28 1.4
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 28 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.9
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 2.5
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.5
SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual 27 2.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 26 4.3
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 26 5.7
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 26 5.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 5.7
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 7.6
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 10.0
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 10.0
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 10.0
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 25 10.0
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 40.3 bits (90), Expect = 2e-04
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 1 KKLADENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAER 120
+K+ +NPD L +LGK+W+ LT +R P+ E+A +
Sbjct: 32 EKMKTDNPDATFGQLGSLLGKRWKELTSTEREPYEEKARQ 71
>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 7 LADENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAE 117
L NP ++N+ +SK++G+ WR+ + + R + + +E
Sbjct: 121 LLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 132 HMTEHPNYKYRPRRRK 179
H +P YKY+PR+ K
Sbjct: 163 HQKMYPGYKYQPRKNK 178
>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
mc|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +1
Query: 7 LADENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAE 117
L NP ++N+ +SK++G+ WR+ + + R + + +E
Sbjct: 121 LLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSE 157
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 132 HMTEHPNYKYRPRRRK 179
H +P YKY+PR+ K
Sbjct: 163 HQKMYPGYKYQPRKNK 178
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 28.7 bits (61), Expect = 0.81
Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +1
Query: 40 DLSKMLGKKWRSLTPQDRRPFVEEAERC-ESY 132
+++K + +KW SL+ DR+ + EEA + E+Y
Sbjct: 148 EVNKAMHEKWGSLSEDDRKTYEEEASKLREAY 179
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 28.7 bits (61), Expect = 0.81
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 132 HMTEHPNYKYRPRRRKQNKAR 194
HM E+P YKY P++R + R
Sbjct: 72 HMLENPEYKYTPKKRSTVRRR 92
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 376 SRSNAGIVSGKVSGAASRRSTPAEAPLPTPDASPVENEKE 495
S + G++S VS + SRR + A + + + SPVE + E
Sbjct: 703 SDTRNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNE 742
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 284 TRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSP 415
+ F + F+P +SPLA Y+++ F + +P SS P
Sbjct: 54 SHFGSSQQRRFAPEVSSPLAEPYESSSSFRLSLSSPPSSKFGGP 97
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/49 (24%), Positives = 18/49 (36%)
Frame = +2
Query: 272 DSPDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPE 418
DSP R H+ F P ++ + D Q ++ P PE
Sbjct: 147 DSPSARHMHSNSPSFPPSQSHTSSYDQSPKGQLRDNISVPNQQDGLDPE 195
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/85 (24%), Positives = 31/85 (36%)
Frame = +2
Query: 254 AYATGTDSPDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEE 433
A AT + T S P + + AS ++ Q+N P S+P+ +P A
Sbjct: 238 ATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANS 297
Query: 434 VLQPKLPYRPQMRLLSRTRKKTSST 508
P + S T SST
Sbjct: 298 TTATSASSTPLTSVNSTTTTSASST 322
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 4 KLADENPDLHNADLSKMLGKKWRSLTPQDRRPFVE 108
KL E L L K L W +LT ++++P+ E
Sbjct: 212 KLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHE 246
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 300 TPEPDSHLTEPRLLPRTTKQTSSSTV 377
+P P+ HLT L PR +Q S+S+V
Sbjct: 346 SPPPEVHLTGEILKPRKKRQESTSSV 371
>SPBC725.10 |||tspO homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -3
Query: 250 PKAAEAEEGALTGVAGWL 197
PK A A+ G LTG+ GWL
Sbjct: 111 PKLALADLGILTGLVGWL 128
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 3.3
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +2
Query: 386 TPESSPARSPEP---QAEEVLQPKLPYRPQMRLLS 481
+P SPAR+P P + + L+P+ P P + L+
Sbjct: 215 SPTRSPARTPSPIRLYSSDALRPQSPLSPSVEYLT 249
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 105 RGSGALRVIHMTEHPNYKYRP 167
+ G +++MTEHP Y+ RP
Sbjct: 67 KSDGIRCLLYMTEHPRYENRP 87
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 582 DRACMICTENTCRISTKGSKSFASPVLEVFFLVLD 478
D ++C + CRI SKS +LEVF +L+
Sbjct: 1416 DHVFLLCAQECCRILLTDSKS--PFILEVFSAILE 1448
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 285 LASPTTPEPDSHLTEPRL 338
+ PT PEPD H+ P+L
Sbjct: 140 IKEPTAPEPDCHIFLPQL 157
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 5.7
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 55 LGKKWRSLTPQDRRPFVEE-AERCESY 132
LGK WR L ++P+++E A + E+Y
Sbjct: 1161 LGKTWRQLDDLGKKPWIDEIAAQREAY 1187
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 7.6
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 40 DLSKMLGKKWRSLTPQDRRPFVEE 111
++ LGK WR+L ++P+V+E
Sbjct: 882 EIRAKLGKTWRALDSLGKQPWVDE 905
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 10.0
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 263 TGTDSPDTRFSHNPGAG--FSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEV 436
T DSP ++ + P + P S + + +QFN +P+ SP++ + +
Sbjct: 200 TSQDSPSLSATNQLSSSDTLEPLQYPP--SSFGSQRQFNASQDSPKRSPSKG--SWSSIL 255
Query: 437 LQPKLPYRPQMRLLSRTRKKTSS 505
+P L Y P+ + R+ ++
Sbjct: 256 RRPSLTYSPKRQSTGLHRRSLTN 278
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.0 bits (52), Expect = 10.0
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 325 QNLASCLGLPNKPAVQRSRSNAGIVSGKVSGAASRRSTPAEAPLPT 462
+NL + L P+ P V+ R+ I + R S+P + P PT
Sbjct: 633 ENLFADLERPSTPPVEIERALTPITTSPQKLKLPRSSSPCKNPSPT 678
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 10.0
Identities = 13/57 (22%), Positives = 24/57 (42%)
Frame = +1
Query: 352 PNKPAVQRSRSNAGIVSGKVSGAASRRSTPAEAPLPTPDASPVENEKENFQYGRGEG 522
P+K + S + GK+S ++ +S+P++ P + D F EG
Sbjct: 108 PSKKSSNNSSRRSSSSVGKLSNVSNMQSSPSKDPFVSQDYEKESISSSQFSKKYSEG 164
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 25.0 bits (52), Expect = 10.0
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 404 ARSPEPQAEEVLQPKLPYRPQMRLLSRTRKKTS 502
AR P+ A + + PY P M + ++ TS
Sbjct: 324 ARQPDYSAHSIPRTAAPYAPSMNMFAQNGPNTS 356
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,560
Number of Sequences: 5004
Number of extensions: 52254
Number of successful extensions: 203
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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