Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20858
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.50 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.5  
X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       22   6.1  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 296 HNPGAGFSPYRTSPLA-SDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQ 442
           H+  A      ++PLA S Y    Q  GH       P  +P PQ E +LQ
Sbjct: 434 HSHAATPHHQHSTPLAHSSYPAAIQI-GHTPHHHPHPPETPGPQVETILQ 482


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 SGALRVIHMTEHPNYKYRPRRRK 179
           SGAL  +H    P  +Y PRR++
Sbjct: 707 SGALDRLHYETDPCVRYYPRRKE 729


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 379 RSNAGIVSGKVSGAASRRSTPAEAPLPTPDASPVENEKENFQYGRGEGL 525
           R+ +G+VSG  +    R   PA+ P P+   S V        YGR  GL
Sbjct: 384 RNRSGLVSGSSTPGTGREHDPAKFP-PSFRISRVAAYN---TYGRNAGL 428


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 364 AVQRSRSNAGIVSGKVSGAASRRSTPAEAPLPTP 465
           +VQR+ +  GI +G + G   R         PTP
Sbjct: 538 SVQRASTEFGIPTGTLYGRCKREGIELSRSNPTP 571


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 52 SY*GRHYADQDF 17
          SY GRH AD DF
Sbjct: 21 SYAGRHTADMDF 32


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = -3

Query: 52 SY*GRHYADQDF 17
          SY GRH AD DF
Sbjct: 21 SYAGRHTADMDF 32


>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 389 PESSPARSPEPQAEEVLQPKLPYRPQMRLLS 481
           PE  PA  PE +A+    P+      +++L+
Sbjct: 23  PEPEPAPEPEAEADAEADPEAGIGAVLKVLT 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,736
Number of Sequences: 438
Number of extensions: 3946
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)