Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20858
(675 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro... 37 0.014
At1g65710.1 68414.m07458 expressed protein ; expression supporte... 34 0.100
At4g35570.1 68417.m05054 high mobility group protein delta (HMGd... 33 0.13
At3g28730.1 68416.m03587 structure-specific recognition protein ... 33 0.17
At1g20693.1 68414.m02592 high mobility group protein beta1 (HMGb... 32 0.40
At5g23420.1 68418.m02747 high mobility group (HMG1/2) family pro... 31 0.53
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 31 0.53
At3g01080.1 68416.m00011 WRKY family transcription factor simila... 31 0.70
At2g17560.1 68415.m02032 high mobility group protein gamma (HMGg... 31 0.70
At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro... 30 1.6
At5g67385.1 68418.m08497 phototropic-responsive protein, putativ... 29 2.1
At2g32870.1 68415.m04030 meprin and TRAF homology domain-contain... 29 2.1
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 29 2.1
At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family pr... 29 2.8
At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-contain... 29 3.8
At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ... 29 3.8
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ... 29 3.8
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ... 29 3.8
At3g06250.1 68416.m00718 far-red impaired responsive protein, pu... 29 3.8
At1g20696.1 68414.m02593 high mobility group protein beta2 (HMGb... 29 3.8
At1g05370.1 68414.m00544 expressed protein 29 3.8
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 28 5.0
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 28 5.0
At5g05190.1 68418.m00553 expressed protein similar to unknown pr... 28 5.0
At4g13195.1 68417.m02052 expressed protein 28 5.0
At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family... 28 5.0
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote... 28 5.0
At3g51880.2 68416.m05690 high mobility group protein alpha (HMGa... 28 6.6
At3g51880.1 68416.m05689 high mobility group protein alpha (HMGa... 28 6.6
At2g43680.2 68415.m05430 calmodulin-binding family protein simil... 28 6.6
At2g43680.1 68415.m05429 calmodulin-binding family protein simil... 28 6.6
At1g72330.1 68414.m08367 alanine aminotransferase, putative simi... 28 6.6
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 28 6.6
At5g07690.1 68418.m00882 myb family transcription factor (MYB29)... 27 8.7
At4g12080.1 68417.m01920 DNA-binding family protein contains a A... 27 8.7
At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family... 27 8.7
At2g02060.1 68415.m00141 calcium-dependent protein kinase-relate... 27 8.7
At1g49190.1 68414.m05515 two-component responsive regulator fami... 27 8.7
>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
protein similar to HMG2B [Homo sapiens] GI:32335;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 456
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +1
Query: 16 ENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAE-RCESYI 135
ENP+ + S +LG KW+SL+ +D++P+ E + E+Y+
Sbjct: 159 ENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEAYL 199
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Frame = +1
Query: 1 KKLADENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAER-CESY 132
KKL +E P +NA ++ ++ KW+ L+ ++++ + +A + E+Y
Sbjct: 395 KKLTEERPGTNNATVTALISLKWKELSEEEKQVYNGKAAKLMEAY 439
>At1g65710.1 68414.m07458 expressed protein ; expression supported
by MPSS
Length = 455
Score = 33.9 bits (74), Expect = 0.100
Identities = 28/88 (31%), Positives = 45/88 (51%)
Frame = +2
Query: 266 GTDSPDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQP 445
G + P S++ A SPYR +PL Q ++ V+ P S +R P P V++
Sbjct: 272 GNNVPSLSRSNSRKAEQSPYRRNPLGEIDQNTKKMIESVK-PNSRTSRGPSPSRVAVVE- 329
Query: 446 KLPYRPQMRLLSRTRKKTSSTGEAKDFE 529
L PQ+ +LSR+R S +++DF+
Sbjct: 330 -LTKAPQV-VLSRSR----SLRKSRDFD 351
>At4g35570.1 68417.m05054 high mobility group protein delta
(HMGdelta) / HMG protein delta identical to HMG protein
(HMGdelta) [Arabidopsis thaliana] GI:2832363
Length = 125
Score = 33.5 bits (73), Expect = 0.13
Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +1
Query: 19 NPDLHNA-DLSKMLGKKWRSLTPQDRRPFVEEAERCESYI*PSILTTSTDLDGESKTRPD 195
NPD + ++ + GKKW+++T ++R PFV +++ ++ ++ + +L +KT D
Sbjct: 56 NPDNKSVGNVGRAAGKKWKTMTEEERAPFVAKSQSKKTEYAVTMQQYNMELANGNKTTGD 115
>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
high mobility group protein / HMG protein nearly
identical to SP|Q05153 Structure-specific recognition
protein 1 homolog (HMG protein) {Arabidopsis thaliana};
contains Pfam profile PF00505: HMG (high mobility group)
box; contains Pfam profile PF03531: Structure-specific
recognition protein
Length = 646
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +1
Query: 16 ENPDLHNADLSKMLGKKWRSLTPQDRRPFVEEAE 117
E+P + ++ K+LG KWR ++ D+ P+ +A+
Sbjct: 583 EHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616
>At1g20693.1 68414.m02592 high mobility group protein beta1
(HMGbeta1) / HMG protein beta1 nearly identical to HMG
protein (HMGbeta1) [Arabidopsis thaliana] GI:2832359
Length = 144
Score = 31.9 bits (69), Expect = 0.40
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 16 ENPDLHN-ADLSKMLGKKWRSLTPQDRRPFVEEAER 120
ENP + A + K G KW+SL+ ++ P+V +AE+
Sbjct: 59 ENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEK 94
>At5g23420.1 68418.m02747 high mobility group (HMG1/2) family
protein similar to high mobility group protein 2 HMG2
[Ipomoea nil] GI:1052956; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 241
Score = 31.5 bits (68), Expect = 0.53
Identities = 12/50 (24%), Positives = 31/50 (62%)
Frame = +1
Query: 40 DLSKMLGKKWRSLTPQDRRPFVEEAERCESYI*PSILTTSTDLDGESKTR 189
D +K+ G+KW+SLT ++++ ++++A ++ S+ + D + E + +
Sbjct: 144 DAAKIGGEKWKSLTEEEKKVYLDKAAELKAEYNKSLESNDADEEEEDEEK 193
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 31.5 bits (68), Expect = 0.53
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 16 ENPDLHNADLSKMLGKKWRSLTPQDRRPFVEE 111
+NP+ + S +LG KW+ ++ ++++P+ E+
Sbjct: 150 QNPEADFKETSNILGAKWKGISAEEKKPYEEK 181
>At3g01080.1 68416.m00011 WRKY family transcription factor similar
to NtWRKY1 transcription factor GB:BAA82107 from
[Nicotiana tabacum]
Length = 423
Score = 31.1 bits (67), Expect = 0.70
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = -1
Query: 594 GCE*DRACMICTENTCRISTKGSKSFASPVLEVFFL-VLDRRRIWGR*GSFGWSTSSACG 418
GCE R+ CT C + K +S + ++ + D R R G G ++ G
Sbjct: 182 GCEYPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHERPQNRRGGGGRDSTEVGG 241
Query: 417 SGDL--AGDDSG 388
+G + + DDSG
Sbjct: 242 AGQMMESSDDSG 253
>At2g17560.1 68415.m02032 high mobility group protein gamma
(HMGgamma) / HMG protein gamma nearly identical to HMG
protein (HMGgamma) [Arabidopsis thaliana] GI:2832355
Length = 138
Score = 31.1 bits (67), Expect = 0.70
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 37 ADLSKMLGKKWRSLTPQDRRPFVEEAE-RCESYI 135
A + K G +W+++T +D+ P+V +AE R YI
Sbjct: 64 ATVGKAAGARWKAMTDEDKAPYVAKAESRKTEYI 97
>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
protein similar to HMG protein [Arabidopsis thaliana]
GI:2832361; contains Pfam profile PF00505: HMG (high
mobility group) box
Length = 151
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Frame = +1
Query: 1 KKLADENPDLHNA-DLSKMLGKKWRSLTPQDRRPFVEEA-ERCESY 132
K+ +ENPD+ + ++ K G+KW+++T +++ + + A E+ E +
Sbjct: 79 KQYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYYDIATEKREEF 124
>At5g67385.1 68418.m08497 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 663
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +2
Query: 350 YQTNQQFNGHVQTPESSPARSPEPQAEEVLQPKL-PYRPQMRLLSR 484
Y Q+ G V SPA P PQ VL PKL Y ++ L R
Sbjct: 528 YYEQQRLRGEVTNDSDSPA-PPPPQPAAVLPPKLSSYTDELSKLKR 572
>At2g32870.1 68415.m04030 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 416
Score = 29.5 bits (63), Expect = 2.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 129 IHMTEHPNYKYRPRRRKQN 185
I ++ HPN YRP++RK+N
Sbjct: 73 IPISSHPNTNYRPKKRKKN 91
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 29.5 bits (63), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 377 HVQTPESSPARSPEPQAEEVLQPK 448
H TP S P +SP P +E V P+
Sbjct: 760 HAPTPNSKPVQSPTPSSEPVSSPE 783
>At1g66470.1 68414.m07551 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 298
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 266 GTDSPDTRFSHNPGAGFSPYRTSPLASDYQTNQQF 370
G D PD ++ G G S +S + SD+Q +Q F
Sbjct: 29 GLDQPDAAYAGGGGGGGSASSSSTMNSDHQQHQGF 63
>At5g12150.1 68418.m01426 pleckstrin homology (PH) domain-containing
protein / RhoGAP domain-containing protein weak
similarity to glucocorticoid receptor DNA binding factor
1 [Canis familiaris] GI:23266717; contains Pfam profiles
PF00169: PH domain, PF00620: RhoGAP domain
Length = 827
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +1
Query: 352 PNKPAVQRSRSNAGIVSGKVSGAASRRSTPAEAPLPTPDASPVENEKENFQYGRGEG 522
P + Q R V+ A R +T AE P S N K + +GRG G
Sbjct: 491 PTENCYQSGREAIPSVTPSTPLTALRYTTSAEKPASKTTGSSTVNSKRSSSWGRGNG 547
>At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 365
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 326 RTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQPKLPYRPQMRLLSRTRKKTSS 505
+ SP A D Q + + V +P+ SP P + +P+LP + + R + TR +
Sbjct: 90 KPSPPAEDKQKPRVESAPVAEKPKAPS-SPPPPKQSAKEPQLPPKERERRVPMTRLRKRV 148
Query: 506 TGEAKD 523
KD
Sbjct: 149 ATRLKD 154
>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 463
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 326 RTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQPKLPYRPQMRLLSRTRKKTSS 505
+ SP A D Q + + V +P+ SP P + +P+LP + + R + TR +
Sbjct: 188 KPSPPAEDKQKPRVESAPVAEKPKAPS-SPPPPKQSAKEPQLPPKERERRVPMTRLRKRV 246
Query: 506 TGEAKD 523
KD
Sbjct: 247 ATRLKD 252
>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 326 RTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQPKLPYRPQMRLLSRTRKKTSS 505
+ SP A D Q + + V +P+ SP P + +P+LP + + R + TR +
Sbjct: 189 KPSPPAEDKQKPRVESAPVAEKPKAPS-SPPPPKQSAKEPQLPPKERERRVPMTRLRKRV 247
Query: 506 TGEAKD 523
KD
Sbjct: 248 ATRLKD 253
>At3g06250.1 68416.m00718 far-red impaired responsive protein,
putative similar to far-red impaired response protein
FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
contains Pfam:PF03101 domain: FAR1 family
Length = 764
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 359 NQQFNGHVQTPESSPARSPEPQAEEV--LQPKLPYRPQMRLLSRTRKKTSSTGEAKDFEP 532
N GH++ +++P S + +A L +P+RP+M+++ K S F+
Sbjct: 113 NHDLGGHIEEAQTTPRPSVQQRAPAPTKLGISVPHRPKMKVVDEADKGRSCPSGVISFKR 172
Query: 533 F 535
F
Sbjct: 173 F 173
>At1g20696.1 68414.m02593 high mobility group protein beta2
(HMGbeta2) / HMG protein beta2 nearly identical to HMG
protein (HMGbeta2) [Arabidopsis thaliana] GI:2832361
Length = 141
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +1
Query: 37 ADLSKMLGKKWRSLTPQDRRPFVEEAER 120
A + K G+KW+SL+ ++ P+V +A++
Sbjct: 64 AAVGKAGGEKWKSLSDSEKAPYVAKADK 91
>At1g05370.1 68414.m00544 expressed protein
Length = 439
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Frame = +2
Query: 263 TGTDSPDTRFSHNPGAGFSPY--RTSPLASDYQTNQQFNGHVQTPESS---PARSPEPQA 427
T TD+ T+ HN GA SP R+ AS ++ F G ++ +S PAR+ + +
Sbjct: 296 TLTDTSSTKLGHNTGAYISPLNARSFSFASPAARSEPFGGPRRSFFASTPMPARTTDRHS 355
Query: 428 EEVLQ-PKLPYRP 463
L+ P++P RP
Sbjct: 356 IGTLRDPRIP-RP 367
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 317 SPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQ 424
SPY+ + L+ DY+ + + V +PE+ R+ P+
Sbjct: 231 SPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPR 266
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +2
Query: 317 SPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQ 424
SPY+ + L+ DY+ + + V +PE+ R+ P+
Sbjct: 231 SPYKRARLSPDYKRDDRRRERVASPENGAVRNRSPR 266
>At5g05190.1 68418.m00553 expressed protein similar to unknown
protein (emb|CAB88044.1)
Length = 615
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 352 PNKPAVQRSRSNAGIVSGKVSGA----ASRRSTPAEAPLPTPDASPVENEKENFQY 507
P+ V+ +S I++ K A A+R S + +PDASPVE ++ Y
Sbjct: 188 PDASPVEEKQSQLDILANKTPSAYDVVAARASNSSGNAEISPDASPVEEKQSQLDY 243
>At4g13195.1 68417.m02052 expressed protein
Length = 112
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 255 RTRQAPTRRTLASPTTPEPDSHLTEPRLLPRTTKQTSSS 371
+ AP++R L P+TP + P PR + +SSS
Sbjct: 50 KNTMAPSKRFLLQPSTPSSSTMKMRPTAHPRRSGTSSSS 88
>At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to vegetative cell wall
protein gp1 [Chlamydomonas reinhardtii]
gi|12018147|gb|AAG45420
Length = 175
Score = 28.3 bits (60), Expect = 5.0
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +2
Query: 278 PDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEV 436
P+T S +P SP + PL +D Q+P SS + SP P+A +V
Sbjct: 66 PETEHSPSPSPANSPSVSPPLPND----------SQSPSSSASPSPSPEASDV 108
>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
kinase, putative identical to putative kinase-like
protein TMKL1 precursor GB:P33543 from [Arabidopsis
thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
Length = 674
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 328 NLASCLGLPNKPAVQRSRSNAGIVSGKVSGAAS 426
N S GLP KP + SR + G V+G V G S
Sbjct: 278 NSPSLCGLPLKPCLGSSRLSPGAVAGLVIGLMS 310
>At3g51880.2 68416.m05690 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 185
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 16 ENPDLHNAD-LSKMLGKKWRSLTPQDRRPFVEEAER 120
ENP++ + K G+KW+S++ ++ P+ E+A +
Sbjct: 74 ENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAK 109
>At3g51880.1 68416.m05689 high mobility group protein alpha
(HMGalpha) / HMG protein alpha nearly identical to HMG
protein (HMGalpha) [Arabidopsis thaliana] GI:2832357;
contains Pfam profile PF00505: HMG (high mobility group)
box
Length = 178
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 16 ENPDLHNAD-LSKMLGKKWRSLTPQDRRPFVEEAER 120
ENP++ + K G+KW+S++ ++ P+ E+A +
Sbjct: 74 ENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAK 109
>At2g43680.2 68415.m05430 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 669
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 RQAPTRRTLASPTTPEPDSHLTE-PRL-LPRTT 353
R P R A PTTP P S L + PRL PR T
Sbjct: 239 RADPPRLDAARPTTPRPPSPLADAPRLDAPRPT 271
>At2g43680.1 68415.m05429 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 668
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 261 RQAPTRRTLASPTTPEPDSHLTE-PRL-LPRTT 353
R P R A PTTP P S L + PRL PR T
Sbjct: 238 RADPPRLDAARPTTPRPPSPLADAPRLDAPRPT 270
>At1g72330.1 68414.m08367 alanine aminotransferase, putative similar
to alanine aminotransferase 2 SP|P34106 from Panicum
miliaceum, SP|P52894 from Hordeum vulgare, GI:4730884
from Oryza sativa
Length = 540
Score = 27.9 bits (59), Expect = 6.6
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 3/104 (2%)
Frame = +2
Query: 242 RFRIAYATGTDSPDTRFSHNPGAGFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEP 421
RF I A G R H+ F + PLAS +F +S + S P
Sbjct: 3 RFLINQAKGLVDHSRRQHHHKSPSFLSPQPRPLASSPPALSRFFSSTSEMSASDSTSSLP 62
Query: 422 QAEEVLQPKL---PYRPQMRLLSRTRKKTSSTGEAKDFEPFVDI 544
+ + PK+ Y + +++ +K KD PF +I
Sbjct: 63 VTLDSINPKVLKCEYAVRGEIVNIAQKLQEDLKTNKDAYPFDEI 106
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 367 VQRSRSNAGIVSGKVSGAASRRSTPAEAPLP 459
++ ++ NAG+ GK +SR TP + P+P
Sbjct: 452 IEEAKKNAGVSFGKYQKTSSRNKTPLD-PIP 481
>At5g07690.1 68418.m00882 myb family transcription factor (MYB29)
similar to myb transcription factor GI:3941436 from
[Arabidopsis thaliana]
Length = 336
Score = 27.5 bits (58), Expect = 8.7
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 311 GFSPYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQPKLP-YRPQMRLLSRT 487
G P PLA D ++Q +P+S P S + E + P Y + R
Sbjct: 120 GIDPVTHKPLAYDSNPDEQSQSGSISPKSLPPSSSKNVPEITSSDETPKYDASLSSKKRC 179
Query: 488 RKKTSSTGE 514
K++SST +
Sbjct: 180 FKRSSSTSK 188
>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 356
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 258 TRQAPTRRTLASPTTPEPDSHLTEPRLLPRTTKQTSSSTVTFK 386
+ Q+PT T P P+P SH T P L +T T+++T +
Sbjct: 42 SNQSPTSVT---PPPPQPSSHHTAPPPLQISTVTTTTTTAAME 81
>At2g25930.1 68415.m03112 hydroxyproline-rich glycoprotein family
protein identical to cDNA nematode responsive protein
GI:2213418
Length = 695
Score = 27.5 bits (58), Expect = 8.7
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Frame = +2
Query: 317 SPYRTSPLASDYQTNQQFN-----GHVQTPESSPARSP-EPQAEEVLQPKLPYRPQMRLL 478
+PY +S Q N+Q N G++Q + RS EP ++ QP Y P+ R
Sbjct: 538 NPYCSSQQQQQQQPNEQMNQFGHPGNLQNTQQQQQRSDNEPAPQQQQQPTKSY-PRARKS 596
Query: 479 SRTRKKTSSTGE-----AKDFEPFVDI 544
+ +S +G +K F PF +
Sbjct: 597 RQGSTGSSPSGPQGISGSKSFRPFAAV 623
>At2g02060.1 68415.m00141 calcium-dependent protein kinase-related /
CDPK-related contains TIGRFAM TIGR01557: myb-like
DNA-binding domain, SHAQKYF class; contains Pfam
PF00249: Myb-like DNA-binding domain; similar to CDPK
substrate protein 1; CSP1 (GI:6942190) [Mesembryanthemum
crystallinum].
Length = 626
Score = 27.5 bits (58), Expect = 8.7
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +2
Query: 314 FSPYRTSP---LASDYQ-TNQQFNGHVQTPESSPARSPEPQAEEVLQPKL 451
FS YRTS + SD T + V SSP+ SP EE+ +PKL
Sbjct: 277 FSLYRTSGYLRIVSDSSSTLSRIFPSVNDSSSSPSPSPSLSPEEIEEPKL 326
>At1g49190.1 68414.m05515 two-component responsive regulator family
protein / response regulator family protein contains
Pfam profile: PF00072 response regulator receiver domain
;contains similarity to two-component response regulator
protein (ARR2) GI:4210451 from [Arabidopsis thaliana]
Length = 608
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +2
Query: 320 PYRTSPLASDYQTNQQFNGHVQTPESSPARSPEPQAEEVLQPKLPYRPQMRLLS 481
PY +Q++ QFN + E A E+ P LPY PQ L++
Sbjct: 550 PYLDHHHQQQHQSSPQFNYLMNNEELLQASGLSATDLELTYPSLPYDPQEYLIN 603
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,167,537
Number of Sequences: 28952
Number of extensions: 301384
Number of successful extensions: 1334
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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