Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20857
         (731 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8QVE1 Cluster: Polyprotein; n=13; Tamana bat virus|Rep...    35   2.4  
UniRef50_Q8IE71 Cluster: Putative uncharacterized protein PF13_0...    35   2.4  
UniRef50_Q8I3Z3 Cluster: Putative uncharacterized protein PFE056...    33   5.5  
UniRef50_Q4SQW7 Cluster: Chromosome 11 SCAF14528, whole genome s...    33   7.2  

>UniRef50_Q8QVE1 Cluster: Polyprotein; n=13; Tamana bat virus|Rep:
            Polyprotein - Tamana bat virus
          Length = 3350

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = +3

Query: 243  RETALRMTYIIFQNTSNKVIHRI*YEMIFVCRKNKNVLCTINNA*ELLNMLYCYRVPRLS 422
            R T L +   +FQ   N +I  I    +F C   KN L T  +  E +N+ +  R   ++
Sbjct: 1272 RWTVLLIIPTVFQLMVNGIITSIVSITVFFCGSMKNTLVTATDIVEGINLGHWKRTAMVT 1331

Query: 423  VIISSMFNDVFL 458
            +++S  F + FL
Sbjct: 1332 LMVSGFFKNEFL 1343


>UniRef50_Q8IE71 Cluster: Putative uncharacterized protein
           PF13_0139; n=2; Plasmodium|Rep: Putative uncharacterized
           protein PF13_0139 - Plasmodium falciparum (isolate 3D7)
          Length = 1661

 Score = 34.7 bits (76), Expect = 2.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 452 NIIEHTRYYDRQSRHAITVQHIKQFLCIIYCTQDIFVFTTNKNHF 318
           NI ++ + YDR   H IT+       CI +C  DI+ +   K+++
Sbjct: 319 NICDNNKKYDRNILHCITLMINNIRFCICFCNFDIYKYIETKSYY 363


>UniRef50_Q8I3Z3 Cluster: Putative uncharacterized protein PFE0560c;
           n=4; Plasmodium|Rep: Putative uncharacterized protein
           PFE0560c - Plasmodium falciparum (isolate 3D7)
          Length = 1419

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 207 NISLSVYKTIL*RETALRMTYIIFQNTSNKV--IHRI*YEMIFVCRKNKNVLCTINNA 374
           N S  +++ I   ET + +  I + NT+N +   +RI  E +F C +N N+  TINNA
Sbjct: 449 NFSSLLFENIKPNETLINLQNINYSNTNNIISNFNRI-NEKLF-CNQNSNISLTINNA 504


>UniRef50_Q4SQW7 Cluster: Chromosome 11 SCAF14528, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 11 SCAF14528, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 590

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -1

Query: 578 STRVTTLAPLEKEDRNHSLHCTXXXXXXXXXXXXICNINLQKNIIEHTRYYDRQSRH 408
           +T+ T  + ++K++R H                 + +   QK I+EHTRY D Q RH
Sbjct: 103 TTQQTMKSQMDKQEREHQQSSAEVALKHSKDLKDLESSYSQKLIVEHTRYQDLQQRH 159


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,520,068
Number of Sequences: 1657284
Number of extensions: 12200676
Number of successful extensions: 27618
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27607
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59265488880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)