Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20857
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.8  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.4  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   6.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   8.4  

>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = -1

Query: 470 NINLQKNIIEHTRYYDRQSRHAITVQHIKQFLCIIYCTQDIFVFTTNKNHFILYSMNYFV 291
           +++LQ  I++   Y+   S   I +  +K+ L  I C++D+    + KN  I +  + FV
Sbjct: 514 SVDLQPLIMKIIMYHAFTSSIIIFISILKRPLASI-CSEDLNCLISVKNRLISFETHGFV 572

Query: 290 R 288
           R
Sbjct: 573 R 573


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 TLQRNFVVSLWEFDYFSLVKKCPNFE 203
           ++  N + S+W+ ++  L+K  PN +
Sbjct: 438 SVDSNIISSIWQSEFIKLIKTVPNMK 463


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 324 SFHIIFYELLC*MCFEI*YRSYEVPFRVTEW-FYTQTD 214
           SF +  ++LLC   F + + S  +  + ++W FYT +D
Sbjct: 127 SFLLSLFDLLCSHHFSVEFTSISLIIKSSQWLFYTLSD 164


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/39 (23%), Positives = 21/39 (53%)
 Frame = +3

Query: 54   YYISAFTFLFITNFHNIQMCWTQQTLQRNFVVSLWEFDY 170
            ++ S +T + +  FH+ Q  +  + L  +  + +WE+ Y
Sbjct: 1411 FFESCWTGVLLNKFHSRQYLFLSRDLVEDLSLRVWEYVY 1449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,128
Number of Sequences: 5004
Number of extensions: 57344
Number of successful extensions: 146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)