Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20857
         (731 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25800.1 68418.m03062 exonuclease family protein contains exo...    28   7.3  
At3g16580.1 68416.m02120 F-box family protein contains F-box dom...    28   7.3  
At2g32620.1 68415.m03982 cellulose synthase family protein simil...    28   7.3  
At1g78960.1 68414.m09206 lupeol synthase, putative / 2,3-oxidosq...    28   7.3  

>At5g25800.1 68418.m03062 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 567

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/57 (26%), Positives = 31/57 (54%)
 Frame = -2

Query: 535 GITVYIVQGYFI*YLD*GEEFVTLIYRKTSLNILDIMTDNLGTR*QYNILSNSYALF 365
           GIT  +++G      D  EEF+ L++++T L    +  D L  +  +N++ ++  L+
Sbjct: 264 GITAVMMEGVTTTLKDIQEEFLKLVFKETILVGHSLENDLLSLKISHNLVIDTAVLY 320


>At3g16580.1 68416.m02120 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 382

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 111 CWTQQTLQRNFVVSLWEFDYFSLVKKC 191
           C T   L+  FV+ ++E D FSL+K+C
Sbjct: 240 CGTSNFLKDAFVLRVFEGDRFSLLKQC 266


>At2g32620.1 68415.m03982 cellulose synthase family protein similar
           to Zea mays cellulose synthase-5 [gi:9622882], -4
           [gi:9622880], -9 [gi:9622890]
          Length = 757

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 96  HNIQMCWTQQTLQRNFVVSLWEFDYFSLVKKCPNFE*NISLSVYKTI 236
           H+IQ  +  Q+  R    S W F  F ++ K      N+ L   KT+
Sbjct: 593 HSIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTM 639


>At1g78960.1 68414.m09206 lupeol synthase, putative /
           2,3-oxidosqualene-triterpenoid cyclase, putative similar
           to lupeol synthase GI:1762150 from [Arabidopsis
           thaliana], 2,3-oxidosqualene-triterpenoid cyclase
           [Arabidopsis thaliana] GI:2738027
          Length = 763

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 446 IEHTRYYDRQSRHAITVQHIKQFLCIIYCTQDIFVFTTNKNHF 318
           +EH  Y D  S H IT+  +++ LC++ C    ++   N +HF
Sbjct: 354 MEHIHYEDENS-HYITIGCVEKVLCMLAC----WIENPNGDHF 391


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,408,745
Number of Sequences: 28952
Number of extensions: 268756
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)